Project name: IL6_Nanobody

Status: done

Started: 2025-07-23 07:21:05
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASNRPLHPSEQGGWFRQAPGQGLEAVAGTDPMANQAARDRDGTGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAIGPMVITQEELDYYRSTAGQGTLVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:19)
Show buried residues

Minimal score value
-3.7963
Maximal score value
1.8477
Average score
-0.6935
Total score value
-86.6899

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5148
2 V A -0.9014
3 Q A -0.2727
4 L A 0.0000
5 V A 1.2703
6 E A 0.4263
7 S A -0.2825
8 G A -0.8795
9 G A 0.0806
10 G A 0.6427
11 L A 1.3497
12 V A 0.0000
13 Q A -1.4148
14 P A -1.6104
15 G A -1.4127
16 G A -0.9656
17 S A -1.2403
18 L A -0.9112
19 R A -2.1434
20 L A 0.0000
21 S A -0.5132
22 C A 0.0000
23 A A -0.0069
24 A A -0.1258
25 S A -0.7325
26 N A -1.2223
27 R A -1.8390
28 P A -0.6359
29 L A -0.0267
30 H A 0.0000
31 P A -0.4052
32 S A -0.1468
33 E A -0.1313
34 Q A -0.4624
35 G A 0.0000
36 G A 0.0000
37 W A 0.0000
38 F A 0.0755
39 R A -0.0008
40 Q A -0.4785
41 A A -0.8148
42 P A -0.9091
43 G A -1.2872
44 Q A -1.6305
45 G A -0.9753
46 L A 0.0785
47 E A -0.5490
48 A A -0.3908
49 V A 0.0000
50 A A -0.8885
51 G A -0.8309
52 T A 0.0000
53 D A -0.7281
54 P A -0.1285
55 M A 0.3733
56 A A -0.4994
57 N A -1.4696
58 Q A -1.4235
59 A A -1.2424
60 A A -1.8423
61 R A -3.1927
62 D A -3.7963
63 R A -3.6313
64 D A -3.1506
65 G A -2.4132
66 T A -2.2092
67 G A -1.5362
68 R A -1.1615
69 F A 0.0000
70 T A -0.7505
71 I A 0.0000
72 S A -0.8443
73 R A -1.2880
74 D A -2.0774
75 N A -2.2361
76 S A -1.9435
77 K A -2.5253
78 N A -1.5624
79 T A 0.0000
80 L A 0.0000
81 Y A -0.7082
82 L A 0.0000
83 Q A -1.3025
84 M A 0.0000
85 N A -1.3800
86 S A -1.2958
87 L A 0.0000
88 R A -2.2484
89 A A -1.5676
90 E A -2.0040
91 D A 0.0000
92 T A -0.2961
93 A A 0.0000
94 V A 0.9313
95 Y A 0.0000
96 Y A 0.0922
97 C A 0.0000
98 A A 0.0000
99 I A 0.0000
100 G A 0.0000
101 P A -0.3151
102 M A 0.3460
103 V A 0.6262
104 I A 1.8477
105 T A 0.1076
106 Q A -1.4738
107 E A -2.4979
108 E A -2.6064
109 L A -1.4508
110 D A -0.9822
111 Y A -0.3981
112 Y A -0.6521
113 R A -1.9636
114 S A -1.3565
115 T A -1.0159
116 A A 0.0000
117 G A 0.0000
118 Q A -1.1712
119 G A -0.1439
120 T A 0.6269
121 L A 1.7467
122 V A 0.0000
123 T A 0.4071
124 V A 0.0000
125 S A -0.6834
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Laboratory of Theory of Biopolymers 2018