Project name: GHKYSDEPR

Status: done

Started: 2026-06-17 11:56:37
Settings
Chain sequence(s) A: GHKGHKGHKYSDEPRGHKGHKGHKYSDEPRGHKGHKGHKYSDEPRGHKGHKGHKYSDEPRGHKGHKGHK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:39)
Show buried residues

Minimal score value
-3.5109
Maximal score value
-0.469
Average score
-2.5187
Total score value
-173.7931

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.4073
2 H A -2.2589
3 K A -2.9617
4 G A -2.6685
5 H A -2.7628
6 K A -3.1304
7 G A -2.3996
8 H A -2.2044
9 K A -2.1200
10 Y A -0.6689
11 S A -1.4868
12 D A -2.8937
13 E A -3.2181
14 P A -2.8144
15 R A -3.2608
16 G A -2.6447
17 H A -2.6451
18 K A -2.9335
19 G A -2.4376
20 H A -2.7111
21 K A -2.9925
22 G A -2.2700
23 H A -2.3336
24 K A -2.1138
25 Y A -0.7107
26 S A -1.4239
27 D A -2.7202
28 E A -3.1825
29 P A -2.6199
30 R A -2.9856
31 G A -2.5843
32 H A -2.7464
33 K A -2.9639
34 G A -2.5163
35 H A -2.6073
36 K A -2.9150
37 G A -2.3931
38 H A -1.9114
39 K A -2.0662
40 Y A -0.5871
41 S A -1.9025
42 D A -3.2420
43 E A -3.5109
44 P A -3.1158
45 R A -3.4386
46 G A -2.5861
47 H A -3.0148
48 K A -3.3051
49 G A -2.7986
50 H A -2.8135
51 K A -3.4282
52 G A -2.3801
53 H A -2.1965
54 K A -1.9097
55 Y A -0.4690
56 S A -1.3579
57 D A -2.9556
58 E A -3.1554
59 P A -2.7030
60 R A -3.2376
61 G A -2.4765
62 H A -2.7659
63 K A -3.1437
64 G A -2.5877
65 H A -2.7592
66 K A -2.9075
67 G A -2.4374
68 H A -2.5841
69 K A -2.3382
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Laboratory of Theory of Biopolymers 2018