| Chain sequence(s) |
A: RADARADARADARADA
C: RADARADARADARADA B: RADARADARADARADA E: RADARADARADARADA D: RADARADARADARADA G: RADARADARADARADA F: RADARADARADARADA H: RADARADARADARADA input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:45)
[INFO] Main: Simulation completed successfully. (00:04:48)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -3.0483 | |
| 2 | A | A | -2.4101 | |
| 3 | D | A | -2.7452 | |
| 4 | A | A | -1.9963 | |
| 5 | R | A | -3.1740 | |
| 6 | A | A | -2.4500 | |
| 7 | D | A | -3.2995 | |
| 8 | A | A | -2.2937 | |
| 9 | R | A | -3.0915 | |
| 10 | A | A | -2.1029 | |
| 11 | D | A | -2.9594 | |
| 12 | A | A | -2.0983 | |
| 13 | R | A | -3.0952 | |
| 14 | A | A | -2.3368 | |
| 15 | D | A | -2.9268 | |
| 16 | A | A | -1.7230 | |
| 1 | R | B | -3.6731 | |
| 2 | A | B | -2.5418 | |
| 3 | D | B | -2.5599 | |
| 4 | A | B | -1.7658 | |
| 5 | R | B | -2.5913 | |
| 6 | A | B | -1.7479 | |
| 7 | D | B | -2.2973 | |
| 8 | A | B | -2.1118 | |
| 9 | R | B | -3.4426 | |
| 10 | A | B | -2.3183 | |
| 11 | D | B | -2.6736 | |
| 12 | A | B | -1.8870 | |
| 13 | R | B | -3.2215 | |
| 14 | A | B | -2.7492 | |
| 15 | D | B | -3.5853 | |
| 16 | A | B | -2.2521 | |
| 1 | R | C | -3.5394 | |
| 2 | A | C | -2.4661 | |
| 3 | D | C | -2.3002 | |
| 4 | A | C | -1.3290 | |
| 5 | R | C | -2.1075 | |
| 6 | A | C | -1.4486 | |
| 7 | D | C | -1.8348 | |
| 8 | A | C | -1.2707 | |
| 9 | R | C | -1.9854 | |
| 10 | A | C | -1.3199 | |
| 11 | D | C | -1.7682 | |
| 12 | A | C | -1.1436 | |
| 13 | R | C | -2.5593 | |
| 14 | A | C | -2.4681 | |
| 15 | D | C | -3.6463 | |
| 16 | A | C | -2.1109 | |
| 1 | R | D | -3.8701 | |
| 2 | A | D | -2.6138 | |
| 3 | D | D | -2.2888 | |
| 4 | A | D | -1.4238 | |
| 5 | R | D | -2.2708 | |
| 6 | A | D | -1.4747 | |
| 7 | D | D | -1.5989 | |
| 8 | A | D | -1.2096 | |
| 9 | R | D | -1.8384 | |
| 10 | A | D | -1.3379 | |
| 11 | D | D | -1.6300 | |
| 12 | A | D | -1.1930 | |
| 13 | R | D | -2.3713 | |
| 14 | A | D | -2.2346 | |
| 15 | D | D | -3.3236 | |
| 16 | A | D | -2.0183 | |
| 1 | R | E | -3.0279 | |
| 2 | A | E | -2.1588 | |
| 3 | D | E | -2.0670 | |
| 4 | A | E | -1.5816 | |
| 5 | R | E | -2.5516 | |
| 6 | A | E | -1.5443 | |
| 7 | D | E | -1.6140 | |
| 8 | A | E | -1.2816 | |
| 9 | R | E | -2.3223 | |
| 10 | A | E | -1.5244 | |
| 11 | D | E | -1.8820 | |
| 12 | A | E | -1.4619 | |
| 13 | R | E | -3.0885 | |
| 14 | A | E | -2.7828 | |
| 15 | D | E | -3.7962 | |
| 16 | A | E | -2.2394 | |
| 1 | R | F | -3.9383 | |
| 2 | A | F | -2.7734 | |
| 3 | D | F | -2.4412 | |
| 4 | A | F | -1.4754 | |
| 5 | R | F | -2.2098 | |
| 6 | A | F | -1.3491 | |
| 7 | D | F | -1.6160 | |
| 8 | A | F | -1.0996 | |
| 9 | R | F | -2.0180 | |
| 10 | A | F | -1.5080 | |
| 11 | D | F | -2.1976 | |
| 12 | A | F | -1.4861 | |
| 13 | R | F | -2.4992 | |
| 14 | A | F | -2.2132 | |
| 15 | D | F | -3.3896 | |
| 16 | A | F | -1.8840 | |
| 1 | R | G | -3.4826 | |
| 2 | A | G | -2.3650 | |
| 3 | D | G | -2.3741 | |
| 4 | A | G | -1.7078 | |
| 5 | R | G | -2.6664 | |
| 6 | A | G | -1.7480 | |
| 7 | D | G | 0.0000 | |
| 8 | A | G | -1.4924 | |
| 9 | R | G | -2.3349 | |
| 10 | A | G | -1.6446 | |
| 11 | D | G | -1.9461 | |
| 12 | A | G | -1.4315 | |
| 13 | R | G | -2.8305 | |
| 14 | A | G | -2.5302 | |
| 15 | D | G | -3.5358 | |
| 16 | A | G | -2.1612 | |
| 1 | R | H | -2.8381 | |
| 2 | A | H | -1.9658 | |
| 3 | D | H | -1.7632 | |
| 4 | A | H | -1.4406 | |
| 5 | R | H | -2.6669 | |
| 6 | A | H | -2.0376 | |
| 7 | D | H | -2.8122 | |
| 8 | A | H | -1.9563 | |
| 9 | R | H | -2.8852 | |
| 10 | A | H | -2.0867 | |
| 11 | D | H | -2.8444 | |
| 12 | A | H | -1.8816 | |
| 13 | R | H | -2.6152 | |
| 14 | A | H | -2.0890 | |
| 15 | D | H | -2.8233 | |
| 16 | A | H | -1.5838 |