Project name: query_structure

Status: done

Started: 2026-03-16 19:55:31
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Chain sequence(s) B: GSVYPKKTHWTAEITPNLHGTEVVVAGWVASLGDYGRVKIVKVSDREGGAAVSVYYLEYGKTPDHLFKVFAELSREDVVVIKGIVEASKAAGVEIFPSEIWILNKA
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:02)
Show buried residues

Minimal score value
-2.8658
Maximal score value
1.8859
Average score
-0.7795
Total score value
-81.8433

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
-1 G B -0.1559
0 S B 0.6546
1 V B 1.8859
2 Y B 1.5298
3 P B -0.1274
4 K B -1.5126
5 K B -1.0784
6 T B -1.0864
7 H B -0.8029
8 W B -0.2848
9 T B 0.0000
10 A B -0.7676
11 E B -1.3843
12 I B 0.0000
13 T B -1.1175
14 P B -1.3689
15 N B -1.7419
16 L B -1.3617
17 H B -1.8021
18 G B -1.3430
19 T B -1.3290
20 E B -1.8876
21 V B 0.0000
22 V B 0.0000
23 V B 0.0000
24 A B -0.0790
25 G B -0.1984
26 W B -0.9248
27 V B 0.0000
28 A B -0.9646
29 S B -0.6986
30 L B -0.2185
31 G B -0.3005
32 D B -1.2977
33 Y B -0.0710
34 G B -0.8956
35 R B -1.6079
36 V B -0.5983
37 K B -0.4891
38 I B 0.0326
39 V B 0.0000
40 K B -0.6774
41 V B 0.0000
42 S B 0.0000
43 D B -1.1217
44 R B -2.4635
45 E B -2.8658
46 G B -1.9105
47 G B -1.7189
48 A B -1.0123
49 A B -0.7833
50 V B 0.0000
51 S B -0.2763
52 V B 0.0000
53 Y B 0.0000
54 L B 0.0000
55 E B -1.0853
56 Y B -0.6830
57 G B -1.3948
58 K B -1.9503
59 T B 0.0000
60 P B -1.8959
61 D B -2.7002
62 H B -2.2833
63 L B 0.0000
64 F B -1.5744
65 K B -2.5510
66 V B -1.3895
67 F B 0.0000
68 A B -1.4507
69 E B -2.2036
70 L B 0.0000
71 S B -1.9264
72 R B -2.7535
73 E B -2.8347
74 D B 0.0000
75 V B -0.4198
76 V B 0.0000
77 V B 0.0000
78 I B 0.0000
79 K B -0.9961
80 G B 0.0000
81 I B -0.5421
82 V B 0.0000
83 E B -1.3099
84 A B -1.3115
85 S B -1.2748
86 K B -1.7615
87 A B -0.8139
88 A B -0.5799
93 G B -0.7879
94 V B -0.8185
95 E B -0.6115
96 I B 0.0000
97 F B -0.3335
98 P B 0.0000
99 S B -0.6886
100 E B -0.5277
101 I B 0.0000
102 W B 0.9703
103 I B 0.3765
104 L B 0.4371
105 N B -1.5182
106 K B -2.6798
107 A B -1.7526
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Laboratory of Theory of Biopolymers 2018