Project name: 2f84aef5a813b34

Status: done

Started: 2025-02-26 09:29:37
Settings
Chain sequence(s) H: EVQLQQSGAELVRSGASVKLSCTASGFDIQDYYMQWVNQRPEQGLEWIGWIDPESGETEYAPKFQGKATMTADTSSNTAYLQLNSLTSEDTAVYYCNAFNWDEGGYSGMDYWGQGTSVTVSS
L: DIVMTQSPSSLSVSAGEKVTMSCKSSQSLLKSGNQKNYLAWYQQKPGQPPKLLIYGASIRESGVPDRFTGSGSGTDFTLTVSSVQAEDLAVYYCQNAHSFPFTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:13)
Show buried residues

Minimal score value
-3.2626
Maximal score value
0.9899
Average score
-0.7294
Total score value
-171.4041

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9834
2 V H -1.2648
3 Q H -1.6687
4 L H 0.0000
5 Q H -1.7737
6 Q H 0.0000
7 S H -0.9118
8 G H -0.9462
9 A H -0.2222
11 E H -0.4529
12 L H 0.7179
13 V H 0.0000
14 R H -1.9623
15 S H -1.3691
16 G H -1.2410
17 A H -1.0682
18 S H -1.1322
19 V H 0.0000
20 K H -1.3157
21 L H 0.0000
22 S H -0.4677
23 C H 0.0000
24 T H -0.8989
25 A H 0.0000
26 S H -1.3665
27 G H -1.3792
28 F H -1.5977
29 D H -2.5282
30 I H 0.0000
35 Q H -3.1863
36 D H -2.9810
37 Y H -1.5502
38 Y H -0.5655
39 M H 0.0000
40 Q H 0.0000
41 W H 0.0000
42 V H 0.0000
43 N H 0.0000
44 Q H -0.9440
45 R H -1.5633
46 P H -1.5271
47 E H -2.5032
48 Q H -2.1598
49 G H -1.2835
50 L H 0.0000
51 E H -1.0645
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 W H 0.0000
56 I H 0.0000
57 D H 0.0000
58 P H 0.0000
59 E H -3.2626
62 S H -2.0509
63 G H -2.1663
64 E H -2.5058
65 T H -1.2526
66 E H -0.9506
67 Y H -0.7462
68 A H 0.0000
69 P H -1.7245
70 K H -2.3127
71 F H 0.0000
72 Q H -2.0999
74 G H -1.4920
75 K H -1.3728
76 A H 0.0000
77 T H -0.6615
78 M H 0.0000
79 T H -0.5316
80 A H -0.9498
81 D H -1.0907
82 T H -1.4144
83 S H -0.7029
84 S H -0.6833
85 N H -1.0501
86 T H 0.0000
87 A H 0.0000
88 Y H -0.1250
89 L H 0.0000
90 Q H -0.8764
91 L H 0.0000
92 N H -0.9610
93 S H -0.9771
94 L H 0.0000
95 T H -1.3129
96 S H -1.3413
97 E H -1.9685
98 D H 0.0000
99 T H -0.6252
100 A H 0.0000
101 V H 0.1035
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 N H 0.0000
106 A H 0.0000
107 F H 0.0000
108 N H -1.1013
109 W H -0.8808
110 D H -2.6415
111 E H -2.7264
111A G H -2.0020
112A G H -1.6061
112 Y H 0.0000
113 S H -0.5855
114 G H 0.0000
115 M H 0.0000
116 D H 0.0000
117 Y H 0.0528
118 W H -0.5665
119 G H 0.0000
120 Q H -1.8353
121 G H -0.9801
122 T H 0.0000
123 S H -0.1663
124 V H 0.0000
125 T H -0.1326
126 V H -0.7113
127 S H -0.6008
128 S H -0.7799
1 D L -1.3442
2 I L -0.2244
3 V L 0.9899
4 M L 0.0000
5 T L -0.2576
6 Q L 0.0000
7 S L -0.6203
8 P L -0.5551
9 S L -0.6885
10 S L -0.7254
11 L L -0.4836
12 S L -0.7038
13 V L -0.9454
14 S L -1.5573
15 A L -1.5363
16 G L -1.7997
17 E L -2.8635
18 K L -2.1813
19 V L 0.0000
20 T L -0.5441
21 M L 0.0000
22 S L -0.6995
23 C L 0.0000
24 K L -1.4686
25 S L 0.0000
26 S L -0.7820
27 Q L -1.5174
28 S L -1.1190
29 L L 0.0000
30 L L -0.7465
31 K L -1.3032
32 S L -1.2354
33 G L -1.5187
34 N L -2.0702
35 Q L -2.1357
36 K L -1.3973
37 N L -0.8561
38 Y L 0.0000
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.3869
46 P L -1.1044
47 G L -1.4562
48 Q L -2.0987
49 P L -1.3567
50 P L 0.0000
51 K L -1.3281
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1474
56 G L -0.1826
57 A L 0.0000
65 S L -0.1007
66 I L 0.3889
67 R L -0.8960
68 E L -0.7634
69 S L -0.6279
70 G L -0.9280
71 V L -0.9264
72 P L -1.2786
74 D L -2.1505
75 R L -1.4679
76 F L 0.0000
77 T L -0.6267
78 G L 0.0000
79 S L -0.5728
80 G L -1.1697
83 S L -1.1233
84 G L -1.0335
85 T L -1.5476
86 D L -2.2333
87 F L 0.0000
88 T L -0.6951
89 L L 0.0000
90 T L -0.4127
91 V L 0.0000
92 S L -1.5675
93 S L -1.7337
94 V L 0.0000
95 Q L -1.6783
96 A L -1.1373
97 E L -1.6943
98 D L 0.0000
99 L L -0.0566
100 A L 0.0000
101 V L -0.2161
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 N L 0.0000
107 A L 0.0000
108 H L -0.3120
109 S L -0.0770
114 F L 0.2506
115 P L -0.3948
116 F L 0.0000
117 T L 0.1031
118 F L 0.1870
119 G L 0.0000
120 G L -0.6289
121 G L 0.0000
122 T L 0.0000
123 K L -1.0447
124 L L 0.0000
125 E L -0.5199
126 I L -0.8574
127 K L -1.6751
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Laboratory of Theory of Biopolymers 2018