Project name: query_structure

Status: done

Started: 2026-03-16 20:28:08
Settings
Chain sequence(s) A: LPAPKNLVVSEVTEDSLRLSWDDPRGFYESFLIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVHNVYKDTNMRGLPLSAEFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:02)
Show buried residues

Minimal score value
-2.9572
Maximal score value
1.2285
Average score
-0.9886
Total score value
-92.9304

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.7183
2 P A 0.1345
3 A A -0.0870
4 P A 0.0000
5 K A -1.9858
6 N A -1.3915
7 L A -0.1408
8 V A 0.9655
9 V A 0.1019
10 S A -0.6793
11 E A -1.8554
12 V A -0.9224
13 T A -1.5319
14 E A -2.7755
15 D A -2.7051
16 S A -2.1370
17 L A 0.0000
18 R A -1.6341
19 L A 0.0000
20 S A -0.6658
21 W A 0.0000
22 D A -2.2051
23 D A 0.0000
24 P A -1.5192
25 R A -1.7738
26 G A -0.9870
27 F A 0.3614
28 Y A 0.0000
29 E A -1.4977
30 S A -1.2003
31 F A 0.0000
32 L A -0.3385
33 I A 0.0000
34 Q A -0.5495
35 Y A -0.6078
36 Q A -1.4627
37 E A -2.0763
38 S A -2.0585
39 E A -2.5016
40 K A -1.7965
41 V A 0.0816
42 G A -0.9022
43 E A -2.0400
44 A A -0.9322
45 I A -0.3965
46 N A -0.9873
47 L A -0.1036
48 T A -0.2044
49 V A 0.0000
50 P A -0.9849
51 G A -0.9889
52 S A -1.2455
53 E A -1.6601
54 R A -1.3803
55 S A -1.0270
56 Y A -1.0889
57 D A -2.1386
58 L A 0.0000
59 T A -1.4927
60 G A -1.4820
61 L A 0.0000
62 K A -2.9572
63 P A -2.5026
64 G A -1.8560
65 T A -2.2025
66 E A -2.7593
67 Y A 0.0000
68 T A -1.4589
69 V A 0.0000
70 S A 0.0000
71 I A 0.0000
72 Y A 0.0000
73 G A 0.0000
74 V A -0.9321
75 H A -1.1493
76 N A -2.3471
77 V A -1.0598
78 Y A -0.3413
79 K A -2.2915
80 D A -2.8027
81 T A -2.0485
82 N A -2.6224
83 M A -1.5236
84 R A -1.5862
85 G A 0.0202
86 L A 1.2285
87 P A 0.3699
88 L A 0.1252
89 S A -0.2151
90 A A -0.5505
91 E A -2.1576
92 F A 0.0000
93 T A -1.6381
94 T A -1.8939
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Laboratory of Theory of Biopolymers 2018