Project name: 2fdf0eca16d54ab

Status: done

Started: 2025-06-03 05:13:58
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGSSVKVSCKASGYSITDDLIHWVRQAPGQGLEWMGWIDPEDGETNYAQKFQGRVTLTADTSTSTAYMELSSLRSEDTAVYYCARSLDSTWIYPFAYWGQGTLVTVSS
L: DIVMTQSPDSLAVSLGERATINCKSSQSLLRRGNQKNHLAWYQQKPGQPPKLLIYDASTGQSGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCLQSYITPPTFGAGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:25)
Show buried residues

Minimal score value
-3.4093
Maximal score value
1.0659
Average score
-0.6631
Total score value
-155.1646

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4661
2 V H -0.8427
3 Q H -1.1496
4 L H 0.0000
5 V H 0.4848
6 Q H 0.0000
7 S H -0.3762
8 G H -0.4921
9 A H 0.1218
11 E H 0.0336
12 V H 0.9470
13 K H -0.9739
14 K H -2.2434
15 P H -2.3948
16 G H -1.7099
17 S H -1.3644
18 S H -1.2596
19 V H 0.0000
20 K H -1.3088
21 V H 0.0000
22 S H -0.2851
23 C H 0.0000
24 K H -0.6281
25 A H 0.0000
26 S H -0.7775
27 G H -1.0749
28 Y H -0.7596
29 S H -0.6534
30 I H 0.0000
35 T H -1.8602
36 D H -1.9977
37 D H 0.0000
38 L H 0.0000
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5459
45 A H -0.9325
46 P H -0.9438
47 G H -1.2113
48 Q H -1.6502
49 G H -0.9055
50 L H 0.0000
51 E H -0.7775
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 W H 0.0000
56 I H 0.0000
57 D H -2.1746
58 P H 0.0000
59 E H -3.4093
62 D H -3.3544
63 G H -2.5901
64 E H -2.5056
65 T H -1.1852
66 N H -0.9089
67 Y H -1.1134
68 A H 0.0000
69 Q H -2.7435
70 K H -2.7429
71 F H 0.0000
72 Q H -2.4649
74 G H -1.6465
75 R H -1.5108
76 V H 0.0000
77 T H -0.6422
78 L H 0.0000
79 T H -0.5045
80 A H -0.6890
81 D H -0.9202
82 T H -0.9040
83 S H -0.4779
84 T H -0.5228
85 S H -0.6082
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2828
89 M H 0.0000
90 E H -1.0157
91 L H 0.0000
92 S H -1.0846
93 S H -1.3433
94 L H 0.0000
95 R H -3.1930
96 S H -2.3986
97 E H -2.5432
98 D H 0.0000
99 T H -0.7785
100 A H 0.0000
101 V H 0.4341
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.1985
107 S H 0.0000
108 L H -0.0786
109 D H -1.0877
110 S H -0.8422
111 T H -0.1722
112A W H 0.7114
112 I H 0.8963
113 Y H 0.4054
114 P H 0.0000
115 F H 0.0000
116 A H 0.0687
117 Y H 0.2663
118 W H -0.1110
119 G H 0.0000
120 Q H -0.9801
121 G H -0.3621
122 T H 0.0000
123 L H 0.5516
124 V H 0.0000
125 T H -0.2149
126 V H 0.0000
127 S H -0.9852
128 S H -1.0440
1 D L -1.3943
2 I L 0.0000
3 V L 0.8813
4 M L 0.0000
5 T L -0.4125
6 Q L 0.0000
7 S L -1.1826
8 P L -1.2691
9 D L -2.1362
10 S L -1.4511
11 L L -0.7887
12 A L -0.4358
13 V L -1.0170
14 S L -0.9953
15 L L -0.0731
16 G L -1.2153
17 E L -2.7114
18 R L -2.7735
19 A L 0.0000
20 T L -0.5922
21 I L 0.0000
22 N L -1.2127
23 C L 0.0000
24 K L -1.6664
25 S L 0.0000
26 S L -0.8113
27 Q L -1.3032
28 S L -1.1879
29 L L 0.0000
30 L L -1.4877
31 R L -2.0755
32 R L -3.0360
33 G L -2.2489
34 N L -2.3530
35 Q L -2.7512
36 K L -1.8947
37 N L 0.0000
38 H L 0.0000
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.1144
46 P L -0.8316
47 G L -1.2581
48 Q L -1.6937
49 P L -1.0869
50 P L 0.0000
51 K L -1.0557
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.0926
56 D L -0.4877
57 A L 0.0000
65 S L -0.6194
66 T L -0.4694
67 G L -1.0156
68 Q L -0.6679
69 S L -0.6023
70 G L -0.8330
71 V L -0.8746
72 P L -1.2126
74 D L -2.0984
75 R L -1.5421
76 F L 0.0000
77 S L -0.8349
78 G L -0.5044
79 S L -0.7275
80 G L -1.0353
83 S L -1.0519
84 G L -1.1221
85 T L -1.3917
86 D L -1.9666
87 F L 0.0000
88 T L -0.8194
89 L L 0.0000
90 T L -0.6479
91 I L 0.0000
92 S L -1.7567
93 S L -1.8434
94 L L 0.0000
95 Q L -1.4092
96 A L -0.6381
97 E L -1.4825
98 D L 0.0000
99 V L -0.3529
100 A L 0.0000
101 V L -0.4575
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 Q L 0.0000
107 S L 0.7667
108 Y L 0.7106
109 I L 1.0659
114 T L 0.2043
115 P L -0.3486
116 P L 0.0000
117 T L 0.2681
118 F L 0.3374
119 G L 0.0000
120 A L -0.4571
121 G L -0.7995
122 T L 0.0000
123 K L -1.3699
124 V L 0.0000
125 E L -0.7860
126 I L -0.2449
127 K L -1.3195
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Laboratory of Theory of Biopolymers 2018