Project name: 30755d930d24aa8

Status: done

Started: 2024-07-09 01:59:33
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Chain sequence(s) A: VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK
B: VDNKFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:54)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:54)
Show buried residues

Minimal score value
-3.3135
Maximal score value
0.5109
Average score
-1.438
Total score value
-166.8105

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 0.5109
2 D A -1.9089
3 N A -3.0968
4 K A -3.2253
5 F A -2.2943
6 N A -3.2672
7 K A -3.2606
8 E A -2.4053
9 Q A 0.0000
10 Q A -1.7421
11 N A -1.3568
12 A A 0.0000
13 F A 0.0000
14 Y A -0.5804
15 E A -0.8998
16 I A 0.0000
17 L A 0.0000
18 H A -0.9834
19 L A 0.0000
20 P A -1.0396
21 N A -1.6500
22 L A 0.0000
23 N A -2.2226
24 E A -2.9317
25 E A -3.1408
26 Q A -2.1330
27 R A 0.0000
28 N A 0.0000
29 A A -1.5241
30 F A 0.0000
31 I A 0.0000
32 Q A -2.0208
33 S A -1.4971
34 L A 0.0000
35 K A -2.1642
36 D A -2.9476
37 D A -2.1077
38 P A -1.8887
39 S A -1.5534
40 Q A -1.8676
41 S A 0.0000
42 A A -1.3308
43 N A -1.8955
44 L A 0.0000
45 L A 0.0000
46 A A -1.5920
47 E A -2.0074
48 A A 0.0000
49 K A -2.8008
50 K A -3.1808
51 L A -2.2805
52 N A -2.5765
53 D A -3.3135
54 A A -2.3058
55 Q A -2.5336
56 A A -2.0980
57 P A -1.7099
58 K A -2.2043
1 V B 0.4482
2 D B -1.6895
3 N B -2.0394
4 K B -3.1803
5 F B -2.1351
6 N B 0.0000
7 K B -2.2877
8 E B -1.1937
9 L B 0.0000
10 S B 0.0000
11 V B 0.4996
12 A B 0.0000
13 G B 0.0000
14 R B -0.7496
15 E B -0.8168
16 I B 0.0000
17 V B 0.0000
18 T B -1.0365
19 L B -0.8534
20 P B -1.1540
21 N B -1.7101
22 L B -1.7759
23 N B -2.4543
24 D B -2.9470
25 P B -2.1420
26 Q B -1.8538
27 K B -1.8709
28 K B -2.2530
29 A B -0.9303
30 F B -0.9612
31 I B 0.0000
32 F B -1.1874
33 S B -1.3397
34 L B 0.0000
35 W B -1.6252
36 D B -3.0752
37 D B -3.0060
38 P B 0.0000
39 S B -1.8898
40 Q B -2.1838
41 S B 0.0000
42 A B -0.8941
43 N B -1.9587
44 L B 0.0000
45 L B -1.1736
46 A B -1.9951
47 E B -2.9135
48 A B 0.0000
49 K B -2.7698
50 K B -3.2838
51 L B -1.9434
52 N B 0.0000
53 D B -3.1695
54 A B -1.7403
55 Q B -2.0908
56 A B -1.6039
57 P B -2.0465
58 K B -2.8054
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Laboratory of Theory of Biopolymers 2018