Project name: A088

Status: done

Started: 2025-06-22 09:40:14
Settings
Chain sequence(s) H: EVKLEESGGGLVQPGGSMKLSCDASGFTFSKYWMNWVRQSPEKGLEWVAEIRLKYNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRDGPMDYWGQGTSVTVSS
L: DIVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:05)
Show buried residues

Minimal score value
-2.884
Maximal score value
1.1528
Average score
-0.6791
Total score value
-155.5127

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1758
2 V H -1.5635
3 K H -2.6562
4 L H 0.0000
5 E H -2.4839
6 E H 0.0000
7 S H -1.2689
8 G H -0.9379
9 G H -0.3847
11 G H 0.2211
12 L H 1.1528
13 V H -0.0418
14 Q H -1.4727
15 P H -1.8564
16 G H -1.9108
17 G H -1.5272
18 S H -1.4197
19 M H -0.8813
20 K H -1.3627
21 L H 0.0000
22 S H -0.9844
23 C H 0.0000
24 D H -2.4005
25 A H 0.0000
26 S H -1.7599
27 G H -1.3070
28 F H -0.6737
29 T H -0.5323
30 F H 0.0000
35 S H -1.2538
36 K H -1.5322
37 Y H -0.4986
38 W H -0.1420
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5324
45 S H 0.0000
46 P H -1.3561
47 E H -2.6150
48 K H -2.2117
49 G H -1.2909
50 L H 0.0000
51 E H -0.5468
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 E H 0.0000
56 I H 0.0000
57 R H -0.6162
58 L H -0.8746
59 K H -1.7731
60 Y H -0.2709
61 N H -0.9187
62 N H -1.5592
63 Y H -0.7824
64 A H -0.5725
65 T H -0.3051
66 H H -0.5971
67 Y H -0.9400
68 A H 0.0000
69 E H -2.4871
70 S H -1.7020
71 V H 0.0000
72 K H -2.5239
74 G H -1.7733
75 R H -1.6941
76 F H 0.0000
77 T H -0.7675
78 I H 0.0000
79 S H -0.1914
80 R H 0.0000
81 D H -1.3130
82 D H -1.6595
83 S H -1.3485
84 K H -2.3342
85 S H -1.6176
86 S H 0.0000
87 V H 0.0000
88 Y H -0.4612
89 L H 0.0000
90 Q H -0.9192
91 M H 0.0000
92 N H -1.8041
93 N H -2.3501
94 L H 0.0000
95 R H -2.4642
96 A H -1.6623
97 E H -2.5530
98 D H 0.0000
99 T H -0.5902
100 G H 0.0000
101 I H 0.3597
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0000
107 D H -0.2500
108 G H -0.4087
114 P H -0.3172
115 M H 0.0000
116 D H -0.3997
117 Y H -0.7385
118 W H 0.0000
119 G H 0.0000
120 Q H -1.9799
121 G H -0.9703
122 T H 0.0000
123 S H 0.0551
124 V H 0.0000
125 T H -0.0323
126 V H 0.0000
127 S H -0.7252
128 S H -0.5584
1 D L -1.5219
2 I L 0.0000
3 V L 0.7063
4 M L 0.0000
5 T L -0.3666
6 Q L 0.0000
7 T L -0.0214
8 P L 0.3553
9 L L 1.1323
10 S L 0.1052
11 L L -0.1772
12 P L -0.7875
13 V L 0.0000
14 S L -0.7418
15 L L 0.0587
16 G L -1.1439
17 D L -1.7562
18 Q L -2.1778
19 A L 0.0000
20 S L -0.7683
21 I L 0.0000
22 S L -0.7360
23 C L 0.0000
24 R L -2.2324
25 S L 0.0000
26 S L -0.9976
27 Q L -1.5813
28 S L -0.8616
29 L L 0.0000
30 V L 0.3065
31 H L -0.5412
32 S L -0.8412
34 N L -1.5724
35 G L -0.9931
36 N L -0.7866
37 T L -0.1352
38 Y L 0.0408
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 Q L -1.0839
45 K L -1.4268
46 P L -0.9140
47 G L -1.4287
48 Q L -2.1588
49 S L -1.5132
50 P L 0.0000
51 K L -1.6560
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.4356
56 K L -0.5672
57 V L -0.5983
65 S L -0.9293
66 N L -1.3586
67 R L -1.9146
68 F L -0.7923
69 S L -0.6512
70 G L -0.8980
71 V L 0.0000
72 P L -1.3420
74 D L -2.4556
75 R L -2.1771
76 F L 0.0000
77 S L -1.3958
78 G L -0.8989
79 S L -0.8145
80 G L -0.9443
83 S L -0.6841
84 G L -0.7390
85 T L -1.4719
86 D L -1.9789
87 F L 0.0000
88 T L -0.8950
89 L L 0.0000
90 K L -1.4933
91 I L 0.0000
92 S L -2.3485
93 R L -2.8840
94 V L 0.0000
95 E L -1.4596
96 A L -0.7384
97 E L -1.9433
98 D L 0.0000
99 L L -0.4437
100 G L 0.0000
101 V L -0.1063
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 S L 0.0000
106 Q L 0.0000
107 S L -0.1311
108 T L 0.0000
109 H L -0.7598
114 V L -0.0247
115 P L -0.5768
116 W L 0.0000
117 T L 0.0027
118 F L 0.2732
119 G L 0.0000
120 G L -0.1924
121 G L 0.0000
122 T L 0.0000
123 K L -0.6943
124 L L 0.0000
125 E L -0.7663
126 I L -0.1645
127 K L -1.3034
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Laboratory of Theory of Biopolymers 2018