Project name: Hg binding

Status: done

Started: 2026-05-23 22:34:15
Settings
Chain sequence(s) A: SAAFDALLARCAALAKERGLDPEAIRARLRALLASLSPEERAAVEARIAAALAEHAADPLRLCLAFCEIAREIARRVGAPAEEVALLEAWAAELQARIAA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations Yes
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:13)
[INFO]       Auto_mut: Residue number 11 from chain A and a score of 0.000 omitted from automated  
                       muatation (excluded by the user).                                           (00:01:13)
[INFO]       Auto_mut: Residue number 63 from chain A and a score of 0.000 omitted from automated  
                       muatation (excluded by the user).                                           (00:01:13)
[INFO]       Auto_mut: Residue number 67 from chain A and a score of 0.000 omitted from automated  
                       muatation (excluded by the user).                                           (00:01:13)
[CRITICAL]   Auto_mut: Couldn't find residues suitable for automated mutations (exceeding a        
                       threshold of -0.20). No automated mutations performed.                      (00:01:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:13)
Show buried residues

Minimal score value
-3.5423
Maximal score value
0.0
Average score
-1.2449
Total score value
-124.4895

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -0.5315
2 A A -0.3614
3 A A -0.4813
4 F A 0.0000
5 D A -1.3355
6 A A -0.8041
7 L A 0.0000
8 L A 0.0000
9 A A -1.2503
10 R A -1.7553
11 C A 0.0000
12 A A -1.8077
13 A A -1.6166
14 L A -1.5045
15 A A 0.0000
16 K A -3.4487
17 E A -3.3836
18 R A -3.0751
19 G A -2.5020
20 L A -2.3812
21 D A -3.2015
22 P A -2.3018
23 E A -2.6697
24 A A -1.8828
25 I A -1.5913
26 R A -2.2264
27 A A -1.5062
28 R A -1.6365
29 L A 0.0000
30 R A -1.5349
31 A A -0.8724
32 L A 0.0000
33 L A 0.0000
34 A A -0.5995
35 S A -0.5736
36 L A 0.0000
37 S A -1.1502
38 P A -1.5270
39 E A -2.3723
40 E A -1.7463
41 R A -1.7344
42 A A -1.4129
43 A A -1.2903
44 V A -1.3092
45 E A -1.1550
46 A A -0.9913
47 R A -1.7803
48 I A 0.0000
49 A A -0.7720
50 A A -1.0453
51 A A 0.0000
52 L A -1.0100
53 A A -0.9270
54 E A -1.9936
55 H A -1.4452
56 A A -0.9845
57 A A -0.6866
58 D A -1.3651
59 P A -1.1125
60 L A -1.1461
61 R A -1.8329
62 L A 0.0000
63 C A 0.0000
64 L A -0.9973
65 A A -0.8179
66 F A 0.0000
67 C A 0.0000
68 E A -1.8494
69 I A -1.3560
70 A A 0.0000
71 R A -2.8055
72 E A -3.2971
73 I A 0.0000
74 A A 0.0000
75 R A -3.5423
76 R A -3.2077
77 V A -1.4493
78 G A -1.4093
79 A A -1.3396
80 P A -1.0606
81 A A -1.2154
82 E A -1.9317
83 E A -1.4473
84 V A 0.0000
85 A A -1.0211
86 L A -0.5103
87 L A 0.0000
88 E A -2.0045
89 A A -1.0598
90 W A 0.0000
91 A A -1.7471
92 A A -1.6406
93 E A -2.7326
94 L A 0.0000
95 Q A -1.9561
96 A A -1.6955
97 R A -2.3515
98 I A -1.1994
99 A A -0.6968
100 A A -0.5224
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Automated mutations analysis

In the automated mutations mode, the server selects aggregation prone resides and each selected residue is mutated to glutamic acid, lysine, aspartic acid and arginine. The table below shows 2 best scored mutants for each mutated residue. Protein variants are ordered according to the mutation effect they had on protein stability (energetic effect) together with the difference in the average per-residue aggregation score between the wild type and the mutant (in the table green values indicate a positive change, grey are neutral, and orange/red mean destabilizing or more aggregation prone mutants).
Summary for all the mutants can be found in this CSV file.

It seems that no suitable candidates for mutation were found. Please see the simualtion's log


Laboratory of Theory of Biopolymers 2018