Project name: 4A6

Status: done

Started: 2024-12-28 01:03:04
Settings
Chain sequence(s) A: AERVEQTPTTTTKEAGESLTINCVLRDSNCALASTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCKGDTLGCGLTVMSWNPGYYYEGGGTPLTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:47)
Show buried residues

Minimal score value
-3.5362
Maximal score value
2.6304
Average score
-0.6914
Total score value
-78.1285

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.2998
2 E A -2.5038
3 R A -3.3287
4 V A 0.0000
5 E A -2.9071
6 Q A 0.0000
7 T A -0.7997
8 P A -0.5668
9 T A -0.5716
10 T A -0.2620
11 T A -0.2308
12 T A -0.6469
13 K A -1.5592
14 E A -2.4769
15 A A -1.8065
16 G A -2.1183
17 E A -2.5904
18 S A -1.8746
19 L A 0.0000
20 T A -0.8141
21 I A 0.0000
22 N A -1.1109
23 C A 0.0000
24 V A -1.7148
25 L A 0.0000
26 R A -3.5362
27 D A -3.3027
28 S A 0.0000
29 N A -1.9126
30 C A 0.0000
31 A A -0.2113
32 L A 0.0000
33 A A 0.0994
34 S A 0.1317
35 T A 0.1095
36 Y A 0.0350
37 W A 0.0000
38 Y A -0.7509
39 F A -1.3037
40 T A -2.0804
41 K A -2.5888
42 K A -2.3116
43 G A -1.6988
44 A A -1.6538
45 T A -1.7726
46 K A -2.7902
47 K A -2.6355
48 E A -2.7499
49 S A -1.3407
50 L A -0.6712
51 S A -1.0310
52 N A -1.8144
53 G A -1.2932
54 G A -1.0121
55 R A -1.2746
56 Y A -1.3130
57 A A -1.2798
58 E A -1.0984
59 T A -0.7634
60 V A -0.4319
61 N A -1.5658
62 K A -2.0917
63 A A -1.1211
64 S A -1.0664
65 K A -1.3163
66 S A -1.1762
67 F A 0.0000
68 S A -0.7233
69 L A 0.0000
70 R A -1.6309
71 I A 0.0000
72 S A -1.6215
73 D A -2.3711
74 L A 0.0000
75 R A -1.4019
76 V A 0.2940
77 E A -0.9743
78 D A 0.0000
79 S A 0.0000
80 G A 0.0000
81 T A -0.8166
82 Y A 0.0000
83 H A -0.6593
84 C A 0.0000
85 K A -0.6314
86 G A 0.0000
87 D A 0.6765
88 T A 0.0000
89 L A 1.5498
90 G A 0.6711
91 C A 0.5505
92 G A 0.8658
93 L A 1.9055
94 T A 1.8042
95 V A 2.6304
96 M A 2.0942
97 S A 1.1901
98 W A 1.0758
99 N A 0.4810
100 P A 0.3257
101 G A 0.8539
102 Y A 1.2759
103 Y A 1.1945
104 Y A -0.6324
105 E A -1.3013
106 G A 0.0000
107 G A -1.3598
108 G A 0.0000
109 T A 0.0000
110 P A -0.5719
111 L A 0.0000
112 T A -0.5643
113 V A -0.5399
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Laboratory of Theory of Biopolymers 2018