| Chain sequence(s) |
A: KLDLKLDLKLDL
C: KLDLKLDLKLDL B: KLDLKLDLKLDL E: KLDLKLDLKLDL D: KLDLKLDLKLDL G: KLDLKLDLKLDL F: KLDLKLDLKLDL I: KLDLKLDLKLDL H: KLDLKLDLKLDL K: KLDLKLDLKLDL J: KLDLKLDLKLDL M: KLDLKLDLKLDL L: KLDLKLDLKLDL O: KLDLKLDLKLDL N: KLDLKLDLKLDL Q: KLDLKLDLKLDL P: KLDLKLDLKLDL S: KLDLKLDLKLDL R: KLDLKLDLKLDL T: KLDLKLDLKLDL input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:41:01)
[INFO] Main: Simulation completed successfully. (00:41:08)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -3.2218 | |
| 2 | L | A | 0.0000 | |
| 3 | D | A | -4.2663 | |
| 4 | L | A | 0.0000 | |
| 5 | K | A | -3.7253 | |
| 6 | L | A | 0.0000 | |
| 7 | D | A | -3.4254 | |
| 8 | L | A | 0.0000 | |
| 9 | K | A | -3.4746 | |
| 10 | L | A | 0.0000 | |
| 11 | D | A | -2.6685 | |
| 12 | L | A | 0.4165 | |
| 1 | K | B | -3.0501 | |
| 2 | L | B | 0.0000 | |
| 3 | D | B | -3.1126 | |
| 4 | L | B | 0.0000 | |
| 5 | K | B | -2.5855 | |
| 6 | L | B | 0.0000 | |
| 7 | D | B | -2.8713 | |
| 8 | L | B | 0.0000 | |
| 9 | K | B | -4.2188 | |
| 10 | L | B | 0.0000 | |
| 11 | D | B | -2.9046 | |
| 12 | L | B | 0.0169 | |
| 1 | K | C | -2.8198 | |
| 2 | L | C | 0.0000 | |
| 3 | D | C | -3.3278 | |
| 4 | L | C | 0.0000 | |
| 5 | K | C | -2.6661 | |
| 6 | L | C | 0.0000 | |
| 7 | D | C | -2.3031 | |
| 8 | L | C | 0.0000 | |
| 9 | K | C | -3.5349 | |
| 10 | L | C | 0.0000 | |
| 11 | D | C | -2.7011 | |
| 12 | L | C | 0.2974 | |
| 1 | K | D | -2.8979 | |
| 2 | L | D | 0.0000 | |
| 3 | D | D | -3.2160 | |
| 4 | L | D | 0.0000 | |
| 5 | K | D | -3.2619 | |
| 6 | L | D | 0.0000 | |
| 7 | D | D | -3.1275 | |
| 8 | L | D | 0.0000 | |
| 9 | K | D | -3.5016 | |
| 10 | L | D | 0.0000 | |
| 11 | D | D | -1.6658 | |
| 12 | L | D | 0.3045 | |
| 1 | K | E | -1.8468 | |
| 2 | L | E | 0.0000 | |
| 3 | D | E | -2.9146 | |
| 4 | L | E | 0.0000 | |
| 5 | K | E | -3.8337 | |
| 6 | L | E | 0.0000 | |
| 7 | D | E | -3.5010 | |
| 8 | L | E | 0.0000 | |
| 9 | K | E | -3.8543 | |
| 10 | L | E | 0.0000 | |
| 11 | D | E | -2.1095 | |
| 12 | L | E | 0.3552 | |
| 1 | K | F | -2.0104 | |
| 2 | L | F | 0.0000 | |
| 3 | D | F | -3.0783 | |
| 4 | L | F | 0.0000 | |
| 5 | K | F | -3.6369 | |
| 6 | L | F | 0.0000 | |
| 7 | D | F | -3.2812 | |
| 8 | L | F | 0.0000 | |
| 9 | K | F | -3.5656 | |
| 10 | L | F | 0.0000 | |
| 11 | D | F | -2.3061 | |
| 12 | L | F | 0.2015 | |
| 1 | K | G | -3.4926 | |
| 2 | L | G | 0.0000 | |
| 3 | D | G | -4.1178 | |
| 4 | L | G | 0.0000 | |
| 5 | K | G | -3.7312 | |
| 6 | L | G | 0.0000 | |
| 7 | D | G | -2.9953 | |
| 8 | L | G | 0.0000 | |
| 9 | K | G | -3.0858 | |
| 10 | L | G | 0.0000 | |
| 11 | D | G | -1.1525 | |
| 12 | L | G | 1.1874 | |
| 1 | K | H | -0.8218 | |
| 2 | L | H | 0.0000 | |
| 3 | D | H | -2.4248 | |
| 4 | L | H | 0.0000 | |
| 5 | K | H | -2.9508 | |
| 6 | L | H | 0.0000 | |
| 7 | D | H | -3.3028 | |
| 8 | L | H | 0.0000 | |
| 9 | K | H | -4.2496 | |
| 10 | L | H | 0.0000 | |
| 11 | D | H | -3.4280 | |
| 12 | L | H | -0.3087 | |
| 1 | K | I | -2.7273 | |
| 2 | L | I | -2.2122 | |
| 3 | D | I | -3.3481 | |
| 4 | L | I | -1.5036 | |
| 5 | K | I | -2.7477 | |
| 6 | L | I | -1.1279 | |
| 7 | D | I | -2.3140 | |
| 8 | L | I | -0.8765 | |
| 9 | K | I | -2.0362 | |
| 10 | L | I | -0.3095 | |
| 11 | D | I | -0.0016 | |
| 12 | L | I | 1.7829 | |
| 1 | K | J | 0.7572 | |
| 2 | L | J | 0.7781 | |
| 3 | D | J | 0.0000 | |
| 4 | L | J | 0.1891 | |
| 5 | K | J | 0.0000 | |
| 6 | L | J | 0.3944 | |
| 7 | D | J | 0.0000 | |
| 8 | L | J | 0.5497 | |
| 9 | K | J | -1.8954 | |
| 10 | L | J | -0.4730 | |
| 11 | D | J | -0.9332 | |
| 12 | L | J | 0.9614 | |
| 1 | K | K | -0.3175 | |
| 2 | L | K | 0.8883 | |
| 3 | D | K | 0.0000 | |
| 4 | L | K | 1.4211 | |
| 5 | K | K | 0.0000 | |
| 6 | L | K | 1.0452 | |
| 7 | D | K | 0.0000 | |
| 8 | L | K | 0.8757 | |
| 9 | K | K | 0.0000 | |
| 10 | L | K | 1.1763 | |
| 11 | D | K | 0.0000 | |
| 12 | L | K | 2.1892 | |
| 1 | K | L | 0.0000 | |
| 2 | L | L | 1.1282 | |
| 3 | D | L | 0.0000 | |
| 4 | L | L | 0.7610 | |
| 5 | K | L | 0.0000 | |
| 6 | L | L | 0.8343 | |
| 7 | D | L | 0.0000 | |
| 8 | L | L | 1.0823 | |
| 9 | K | L | 0.0000 | |
| 10 | L | L | 0.8579 | |
| 11 | D | L | 0.0000 | |
| 12 | L | L | 1.4948 | |
| 1 | K | M | 0.7169 | |
| 2 | L | M | 1.0400 | |
| 3 | D | M | 0.0000 | |
| 4 | L | M | 0.7503 | |
| 5 | K | M | 0.0000 | |
| 6 | L | M | 0.6786 | |
| 7 | D | M | 0.0000 | |
| 8 | L | M | 0.6060 | |
| 9 | K | M | 0.0000 | |
| 10 | L | M | 0.7826 | |
| 11 | D | M | 0.0000 | |
| 12 | L | M | 2.4648 | |
| 1 | K | N | 0.0000 | |
| 2 | L | N | 0.6829 | |
| 3 | D | N | 0.0000 | |
| 4 | L | N | 0.2323 | |
| 5 | K | N | 0.0000 | |
| 6 | L | N | 0.1094 | |
| 7 | D | N | 0.0000 | |
| 8 | L | N | 0.2168 | |
| 9 | K | N | 0.0000 | |
| 10 | L | N | 0.7062 | |
| 11 | D | N | 0.0000 | |
| 12 | L | N | 2.3346 | |
| 1 | K | O | 0.0000 | |
| 2 | L | O | 0.4414 | |
| 3 | D | O | 0.0000 | |
| 4 | L | O | -0.0601 | |
| 5 | K | O | 0.0000 | |
| 6 | L | O | 0.0939 | |
| 7 | D | O | 0.0000 | |
| 8 | L | O | 0.1274 | |
| 9 | K | O | 0.0000 | |
| 10 | L | O | 0.7538 | |
| 11 | D | O | 0.0000 | |
| 12 | L | O | 2.2085 | |
| 1 | K | P | 0.0614 | |
| 2 | L | P | 0.6876 | |
| 3 | D | P | 0.0000 | |
| 4 | L | P | 0.1246 | |
| 5 | K | P | -1.3735 | |
| 6 | L | P | 0.3274 | |
| 7 | D | P | -0.9927 | |
| 8 | L | P | -0.0188 | |
| 9 | K | P | -1.6646 | |
| 10 | L | P | 0.5150 | |
| 11 | D | P | -0.1132 | |
| 12 | L | P | 1.6333 | |
| 1 | K | Q | -2.0666 | |
| 2 | L | Q | 0.0000 | |
| 3 | D | Q | -2.3829 | |
| 4 | L | Q | 0.0000 | |
| 5 | K | Q | -1.6953 | |
| 6 | L | Q | 0.0000 | |
| 7 | D | Q | -2.3772 | |
| 8 | L | Q | 0.0000 | |
| 9 | K | Q | -2.3755 | |
| 10 | L | Q | -0.4387 | |
| 11 | D | Q | -1.4384 | |
| 12 | L | Q | 1.2057 | |
| 1 | K | R | -1.2987 | |
| 2 | L | R | 0.0000 | |
| 3 | D | R | -2.0875 | |
| 4 | L | R | 0.0000 | |
| 5 | K | R | -2.2150 | |
| 6 | L | R | 0.0000 | |
| 7 | D | R | -2.0371 | |
| 8 | L | R | 0.0000 | |
| 9 | K | R | -2.9205 | |
| 10 | L | R | 0.0000 | |
| 11 | D | R | -2.2126 | |
| 12 | L | R | 0.5512 | |
| 1 | K | S | -2.6201 | |
| 2 | L | S | 0.0000 | |
| 3 | D | S | -3.0174 | |
| 4 | L | S | 0.0000 | |
| 5 | K | S | -2.8228 | |
| 6 | L | S | 0.0000 | |
| 7 | D | S | -2.2818 | |
| 8 | L | S | 0.0000 | |
| 9 | K | S | -2.2393 | |
| 10 | L | S | 0.0000 | |
| 11 | D | S | -1.4873 | |
| 12 | L | S | 1.2684 | |
| 1 | K | T | -2.3144 | |
| 2 | L | T | 0.0000 | |
| 3 | D | T | -2.4848 | |
| 4 | L | T | 0.0000 | |
| 5 | K | T | -3.3065 | |
| 6 | L | T | 0.0000 | |
| 7 | D | T | -3.7158 | |
| 8 | L | T | 0.0000 | |
| 9 | K | T | -3.9700 | |
| 10 | L | T | 0.0000 | |
| 11 | D | T | -2.9940 | |
| 12 | L | T | 0.0519 |