Project name: 16_rank

Status: done

Started: 2026-04-29 08:04:52
Settings
Chain sequence(s) B: LSPEQQKEIKEAVQIMADFENMIHPGYKGYEDAYPGVKVKNKWPSWDEFHRADRIMVQYMQLQA
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:44)
Show buried residues

Minimal score value
-4.6221
Maximal score value
1.5126
Average score
-1.2475
Total score value
-79.8416

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L B 0.6116
2 S B -0.8996
3 P B -2.1580
4 E B -3.5344
5 Q B -2.9311
6 Q B -3.6338
7 K B -4.6221
8 E B -4.5200
9 I B 0.0000
10 K B -3.4990
11 E B -3.3444
12 A B 0.0000
13 V B 0.0000
14 Q B -1.7137
15 I B -1.2887
16 M B -0.6339
17 A B 0.0000
18 D B 0.0000
19 F B 0.1851
20 E B -0.2346
21 N B -0.5583
22 M B 0.7248
23 I B 1.5126
24 H B -0.3185
25 P B -0.6018
26 G B -0.7827
27 Y B -0.6729
28 K B -2.3411
29 G B -1.4141
30 Y B -1.3739
31 E B -2.1453
32 D B -2.5360
33 A B -1.1096
34 Y B -1.1811
35 P B -1.3348
36 G B -1.2931
37 V B -1.8137
38 K B -2.6912
39 V B -2.2004
40 K B -2.6653
41 N B -2.5675
42 K B -2.0052
43 W B 0.0673
44 P B 0.0000
45 S B -0.4082
46 W B -0.3588
47 D B -2.4989
48 E B -2.2286
49 F B -1.5892
50 H B -2.8280
51 R B -3.6479
52 A B 0.0000
53 D B -2.0733
54 R B -2.2353
55 I B -1.6752
56 M B 0.0000
57 V B 0.7808
58 Q B -0.3597
59 Y B 0.1735
60 M B 0.6453
61 Q B -0.1945
62 L B 0.8300
63 Q B -0.3594
64 A B -0.2958
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018