Project name: sol_368_1st

Status: done

Started: 2024-06-18 22:23:50
Settings
Chain sequence(s) A: TVKFPEDFGKRESDLKLSVLLVEMLRDINLRLGCRLSREEIEAVRADPRYIDLALEIVYTTRPKLAKELAEKLRLKNIESLALLLCGVSPPGNLGLEYVSKVDGNLELAYVIFFESWRYFREHGPELLKEYSKGIYPEDLSDKVPYKGIEISLKLVEKPILEGIELREKDPSKLEKVLKELEKRIEELKEEVKKLSEENVGDTLKYSLDPKILKAAEELPKRMYEEGKKKAEEAGLSEEDVIAIALLAATVNVQLCSTILNVAFPKEVISKVFFFPLIVMRETEKFLEEFIKKYKEEKEKKK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:07)
Show buried residues

Minimal score value
-5.6865
Maximal score value
1.3428
Average score
-1.4943
Total score value
-451.2722

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 T A -0.3253
2 V A -0.3910
3 K A -1.2274
4 F A 0.0518
5 P A -1.1580
6 E A -2.7164
7 D A -2.9370
8 F A -1.5378
9 G A -1.6753
10 K A -2.8702
11 R A -2.6056
12 E A -2.2512
13 S A -1.4522
14 D A -1.1990
15 L A 0.0672
16 K A -0.6136
17 L A -0.2391
18 S A 0.7139
19 V A 1.3428
20 L A 0.0000
21 L A 0.9129
22 V A 0.9078
23 E A -0.2239
24 M A -0.6425
25 L A 0.0174
26 R A -1.5414
27 D A -1.3065
28 I A -0.6499
29 N A 0.0000
30 L A -1.0598
31 R A -1.3187
32 L A 0.0000
33 G A 0.0000
34 C A 0.0000
35 R A -1.3776
36 L A 0.0000
37 S A 0.0000
38 R A -3.6979
39 E A -4.0143
40 E A -3.8084
41 I A 0.0000
42 E A -3.8258
43 A A -2.6061
44 V A 0.0000
45 R A -2.7442
46 A A -1.6324
47 D A -1.7234
48 P A -1.8801
49 R A -2.5540
50 Y A -1.5249
51 I A -1.6308
52 D A -2.6630
53 L A -1.6949
54 A A 0.0000
55 L A -1.2373
56 E A -2.1301
57 I A 0.0000
58 V A 0.0000
59 Y A 0.0000
60 T A -0.9010
61 T A 0.0000
62 R A 0.0000
63 P A 0.0000
64 K A -1.7005
65 L A -1.5600
66 A A 0.0000
67 K A -2.2276
68 E A -3.5318
69 L A 0.0000
70 A A 0.0000
71 E A -4.1848
72 K A -3.7546
73 L A 0.0000
74 R A -3.8621
75 L A -2.8723
76 K A -2.8882
77 N A -2.1366
78 I A -0.8377
79 E A 0.0000
80 S A -1.5972
81 L A 0.0000
82 A A 0.0000
83 L A 0.0000
84 L A 0.0000
85 L A 0.0000
86 C A 0.0000
87 G A 0.0000
88 V A 0.0000
89 S A 0.0000
90 P A 0.0000
91 P A 0.0000
92 G A 0.0000
93 N A -0.0691
94 L A -0.0010
95 G A 0.0000
96 L A 0.0000
97 E A -0.4353
98 Y A 0.0000
99 V A 0.0000
100 S A -1.1642
101 K A -1.5494
102 V A -1.3549
103 D A -2.1067
104 G A -1.8616
105 N A -1.4640
106 L A -1.0143
107 E A -1.6294
108 L A 0.0000
109 A A 0.0000
110 Y A 0.0070
111 V A 0.0000
112 I A 0.0000
113 F A 0.0000
114 F A -0.1254
115 E A -0.7060
116 S A 0.0000
117 W A 0.0000
118 R A -1.9156
119 Y A -1.2000
120 F A 0.0000
121 R A -2.2298
122 E A -2.7721
123 H A -2.1909
124 G A 0.0000
125 P A -2.6596
126 E A -3.1240
127 L A -1.9279
128 L A 0.0000
129 K A -3.6588
130 E A -3.4370
131 Y A 0.0000
132 S A 0.0000
133 K A -3.1280
134 G A -1.7385
135 I A -1.2969
136 Y A -1.5470
137 P A -1.9318
138 E A -3.1057
139 D A -3.7985
140 L A 0.0000
141 S A -2.7503
142 D A -2.4940
143 K A -1.2324
144 V A 0.0000
145 P A -0.7300
146 Y A -0.7382
147 K A -1.5758
148 G A -1.1374
149 I A 0.0000
150 E A -1.7894
151 I A -0.2544
152 S A -0.6225
153 L A -1.2231
154 K A -1.9151
155 L A -1.0978
156 V A 0.0000
157 E A -1.8332
158 K A -2.8077
159 P A -2.2344
160 I A 0.0000
161 L A -1.8676
162 E A -2.8150
163 G A 0.0000
164 I A 0.0000
165 E A -3.9590
166 L A -3.1771
167 R A -3.8335
168 E A -4.0410
169 K A -3.8740
170 D A -3.1614
171 P A -2.8188
172 S A -1.9795
173 K A -2.6542
174 L A -3.0723
175 E A -3.5462
176 K A -3.7722
177 V A -2.6762
178 L A -3.2258
179 K A -4.4848
180 E A -4.4702
181 L A 0.0000
182 E A -4.4125
183 K A -4.9401
184 R A -4.3153
185 I A 0.0000
186 E A -4.8745
187 E A -4.7939
188 L A 0.0000
189 K A -4.1012
190 E A -4.8029
191 E A -3.9312
192 V A -3.2324
193 K A -4.2738
194 K A -4.2755
195 L A -3.0918
196 S A -2.8054
197 E A -3.9394
198 E A -3.5217
199 N A 0.0000
200 V A -1.0435
201 G A -2.6198
202 D A -2.6830
203 T A -1.2894
204 L A -0.6372
205 K A -2.0072
206 Y A -1.0446
207 S A -0.6295
208 L A -0.7514
209 D A -1.3252
210 P A -1.2087
211 K A -2.2200
212 I A 0.0000
213 L A -0.8822
214 K A -1.8312
215 A A 0.0000
216 A A 0.0000
217 E A -2.0012
218 E A -1.4373
219 L A 0.0000
220 P A 0.0000
221 K A -2.0268
222 R A -2.1354
223 M A 0.0000
224 Y A 0.0000
225 E A -3.2594
226 E A -2.8174
227 G A 0.0000
228 K A -3.2410
229 K A -3.9239
230 K A -3.2268
231 A A 0.0000
232 E A -3.9580
233 E A -3.4406
234 A A -2.1645
235 G A -1.9881
236 L A -1.5439
237 S A -1.7043
238 E A -3.0463
239 E A -2.5733
240 D A 0.0000
241 V A 0.0000
242 I A 0.0000
243 A A 0.0000
244 I A 0.0000
245 A A 0.0000
246 L A 0.0000
247 L A 0.0000
248 A A 0.0000
249 A A 0.0000
250 T A 0.0000
251 V A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -1.2101
255 L A 0.0000
256 C A 0.0000
257 S A -0.2758
258 T A -0.3047
259 I A 0.0000
260 L A 0.0000
261 N A -0.2582
262 V A 0.3431
263 A A 0.0000
264 F A 0.0000
265 P A -1.2840
266 K A -2.5136
267 E A -2.5864
268 V A -1.1137
269 I A 0.0000
270 S A -1.3829
271 K A -1.0895
272 V A 0.0000
273 F A -0.0036
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.1672
278 I A 0.1090
279 V A 0.0000
280 M A -0.5194
281 R A -1.4571
282 E A -1.9205
283 T A 0.0000
284 E A -2.3665
285 K A -3.3534
286 F A -2.4051
287 L A 0.0000
288 E A -3.8922
289 E A -4.0182
290 F A 0.0000
291 I A -3.0326
292 K A -4.4424
293 K A -4.7457
294 Y A -3.6693
295 K A -4.3844
296 E A -5.5522
297 E A -5.6865
298 K A -4.9779
299 E A -5.6231
300 K A -5.3247
301 K A -4.7927
302 K A -4.0039
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Laboratory of Theory of Biopolymers 2018