| Chain sequence(s) |
A: GGGHKGF
C: GGGHKGF B: GGGHKGF E: GGGHKGF D: GGGHKGF G: GGGHKGF F: GGGHKGF I: GGGHKGF H: GGGHKGF K: GGGHKGF J: GGGHKGF L: GGGHKGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:14)
[INFO] Main: Simulation completed successfully. (00:03:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.7065 | |
| 2 | G | A | -2.1929 | |
| 3 | G | A | -2.9682 | |
| 4 | H | A | -3.0569 | |
| 5 | K | A | -2.1518 | |
| 6 | G | A | -0.3419 | |
| 7 | F | A | 1.7556 | |
| 1 | G | B | -1.4023 | |
| 2 | G | B | -1.7483 | |
| 3 | G | B | -2.7345 | |
| 4 | H | B | -3.4687 | |
| 5 | K | B | -3.3891 | |
| 6 | G | B | -1.4804 | |
| 7 | F | B | 0.5764 | |
| 1 | G | C | -1.5540 | |
| 2 | G | C | -1.5382 | |
| 3 | G | C | -2.1887 | |
| 4 | H | C | -2.8991 | |
| 5 | K | C | -2.4101 | |
| 6 | G | C | -0.8616 | |
| 7 | F | C | 1.0991 | |
| 1 | G | D | -1.5625 | |
| 2 | G | D | -1.9445 | |
| 3 | G | D | -2.3781 | |
| 4 | H | D | -2.5160 | |
| 5 | K | D | -2.0704 | |
| 6 | G | D | -0.8263 | |
| 7 | F | D | 1.2503 | |
| 1 | G | E | -1.6521 | |
| 2 | G | E | -2.1958 | |
| 3 | G | E | -2.5742 | |
| 4 | H | E | -2.8804 | |
| 5 | K | E | -2.7885 | |
| 6 | G | E | -1.4230 | |
| 7 | F | E | 1.1256 | |
| 1 | G | F | -1.5803 | |
| 2 | G | F | -2.3293 | |
| 3 | G | F | -2.5966 | |
| 4 | H | F | -2.7090 | |
| 5 | K | F | -2.4144 | |
| 6 | G | F | -0.3057 | |
| 7 | F | F | 1.8552 | |
| 1 | G | G | -1.5208 | |
| 2 | G | G | -1.7160 | |
| 3 | G | G | -2.2923 | |
| 4 | H | G | -2.1994 | |
| 5 | K | G | -1.1539 | |
| 6 | G | G | 0.1838 | |
| 7 | F | G | 2.3815 | |
| 1 | G | H | -1.3600 | |
| 2 | G | H | -1.6736 | |
| 3 | G | H | -2.1752 | |
| 4 | H | H | -2.5229 | |
| 5 | K | H | -1.7370 | |
| 6 | G | H | -0.0755 | |
| 7 | F | H | 2.1066 | |
| 1 | G | I | -1.9869 | |
| 2 | G | I | -1.7861 | |
| 3 | G | I | -2.0722 | |
| 4 | H | I | -2.1947 | |
| 5 | K | I | -2.0025 | |
| 6 | G | I | -0.4747 | |
| 7 | F | I | 1.6372 | |
| 1 | G | J | 0.0000 | |
| 2 | G | J | -1.9664 | |
| 3 | G | J | -2.5073 | |
| 4 | H | J | -2.5085 | |
| 5 | K | J | -2.3935 | |
| 6 | G | J | -0.8905 | |
| 7 | F | J | 1.4099 | |
| 1 | G | K | -1.4894 | |
| 2 | G | K | -1.9305 | |
| 3 | G | K | -2.6800 | |
| 4 | H | K | -3.0207 | |
| 5 | K | K | -2.0671 | |
| 6 | G | K | -0.5130 | |
| 7 | F | K | 1.8871 | |
| 1 | G | L | -1.5988 | |
| 2 | G | L | -2.4063 | |
| 3 | G | L | -2.4257 | |
| 4 | H | L | -2.5412 | |
| 5 | K | L | -2.1628 | |
| 6 | G | L | -0.6725 | |
| 7 | F | L | 1.4832 |