Project name: wt3_af

Status: done

Started: 2026-02-25 13:23:43
Settings
Chain sequence(s) A: AQNPHERGPDPSNSYIEQARGSYSVSQRSISRLGSDGFRDGTMYYPTSTADGRFGVVAISPGYTASESTIAWLGPRLASFGFVVVTINTDSRYDQPRQRATQLHAALDHAIGDSVVGPRIDTSRQAVMGHSMGGGGALQAAEERDEIRAAVPLTPWNLKKGWSGVDAATLVIGAENDAIAPVRSHSIPFYESLTNAERRAYLELRREGHFAPNSSNTLIAKYSVSWLKRYVDNDLRYDQFIDPGPRTGITTGVSDYRLG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:09)
Show buried residues

Minimal score value
-3.775
Maximal score value
1.8493
Average score
-0.6331
Total score value
-163.9821

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.6277
2 Q A -1.5605
3 N A -1.3786
4 P A -1.6710
5 H A -1.9703
6 E A -2.1145
7 R A 0.0000
8 G A -1.1418
9 P A -1.3547
10 D A -2.1110
11 P A 0.0000
12 S A -1.5212
13 N A -1.9243
14 S A -1.3726
15 Y A -1.5389
16 I A 0.0000
17 E A -2.1083
18 Q A -2.0133
19 A A -1.3577
20 R A -1.9494
21 G A -1.2164
22 S A -0.6695
23 Y A -0.3226
24 S A -0.2789
25 V A -0.2176
26 S A -0.6638
27 Q A -1.5588
28 R A -1.3389
29 S A -1.1768
30 I A 0.0000
31 S A -1.2865
32 R A -2.3778
33 L A -0.1099
34 G A -0.9946
35 S A -1.7955
36 D A -2.7890
37 G A -2.3820
38 F A 0.0000
39 R A -3.1248
40 D A -2.0926
41 G A 0.0000
42 T A -0.7180
43 M A 0.0000
44 Y A 0.0000
45 Y A 0.0000
46 P A 0.0000
47 T A -0.2000
48 S A -0.6183
49 T A -1.0517
50 A A -0.9852
51 D A -2.1429
52 G A -2.1217
53 R A -2.5849
54 F A 0.0000
55 G A 0.0000
56 V A 0.0000
57 V A 0.0000
58 A A 0.0000
59 I A 0.0000
60 S A 0.0000
61 P A 0.0000
62 G A 0.0000
63 Y A 0.5184
64 T A -0.0609
65 A A -0.2785
66 S A -0.6511
67 E A -0.5024
68 S A -0.4282
69 T A -0.1015
70 I A 0.0000
71 A A -0.1744
72 W A -0.0732
73 L A 0.0000
74 G A 0.0000
75 P A -0.3995
76 R A 0.0000
77 L A 0.0000
78 A A 0.0000
79 S A 0.0000
80 F A 0.0000
81 G A 0.0000
82 F A 0.0000
83 V A 0.0000
84 V A 0.0000
85 V A 0.0000
86 T A 0.0000
87 I A 0.0000
88 N A -1.7535
89 T A 0.0000
90 D A -3.1980
91 S A -1.7023
92 R A -1.6901
93 Y A 0.1524
94 D A 0.0000
95 Q A -0.9640
96 P A 0.0000
97 R A -2.4294
98 Q A -2.0938
99 R A 0.0000
100 A A 0.0000
101 T A -1.1505
102 Q A 0.0000
103 L A 0.0000
104 H A -0.8652
105 A A -1.1079
106 A A 0.0000
107 L A 0.0000
108 D A -1.6809
109 H A -1.4003
110 A A 0.0000
111 I A -0.4209
112 G A -0.7431
113 D A -0.4193
114 S A 0.0139
115 V A 0.6567
116 V A 0.0000
117 G A -0.5049
118 P A -0.6403
119 R A -1.1664
120 I A 0.0000
121 D A -1.0110
122 T A -0.7458
123 S A -0.9288
124 R A 0.0000
125 Q A 0.0000
126 A A 0.0000
127 V A 0.0000
128 M A 0.0000
129 G A 0.0000
130 H A 0.0000
131 S A 0.0000
132 M A 0.2351
133 G A 0.0000
134 G A 0.0000
135 G A 0.0000
136 G A 0.0000
137 A A 0.0000
138 L A 0.0000
139 Q A 0.0000
140 A A 0.0000
141 A A 0.0000
142 E A -2.4719
143 E A -3.0478
144 R A -2.8116
145 D A -3.3635
146 E A -2.3515
147 I A 0.0000
148 R A -2.4409
149 A A 0.0000
150 A A 0.0000
151 V A 0.0000
152 P A 0.0000
153 L A 0.0000
154 T A 0.0000
155 P A 0.0000
156 W A 0.5730
157 N A 0.0000
158 L A 0.7939
159 K A -0.7462
160 K A -1.2140
161 G A -1.1258
162 W A 0.0000
163 S A -1.5454
164 G A -1.7742
165 V A 0.0000
166 D A -3.7750
167 A A 0.0000
168 A A 0.0000
169 T A 0.0000
170 L A 0.0000
171 V A 0.0000
172 I A 0.0000
173 G A 0.0000
174 A A 0.0000
175 E A -2.1036
176 N A -1.7855
177 D A 0.0000
178 A A 0.4045
179 I A 1.6173
180 A A 0.0000
181 P A -0.4912
182 V A 0.0000
183 R A -1.9302
184 S A -0.9061
185 H A 0.0000
186 S A 0.0000
187 I A -1.0554
188 P A -1.4195
189 F A 0.0000
190 Y A 0.0000
191 E A -2.1102
192 S A -1.4649
193 L A 0.0000
194 T A -1.8908
195 N A -2.5866
196 A A -2.9106
197 E A -3.1618
198 R A -2.0119
199 R A -1.6861
200 A A 0.0000
201 Y A 0.0000
202 L A 0.0000
203 E A 0.0000
204 L A 0.0000
205 R A -1.5731
206 R A -2.5675
207 E A -1.7926
208 G A -0.5686
209 H A 0.0000
210 F A 1.8493
211 A A 0.3350
212 P A 0.0000
213 N A 0.1958
214 S A -0.1377
215 S A -0.3740
216 N A -0.4063
217 T A -0.5400
218 L A -0.0421
219 I A 0.0000
220 A A 0.0000
221 K A 0.0000
222 Y A 0.0000
223 S A 0.0000
224 V A 0.0000
225 S A 0.0000
226 W A 0.0000
227 L A 0.0000
228 K A 0.0000
229 R A -0.7407
230 Y A 0.0000
231 V A 0.0000
232 D A 0.0000
233 N A -1.5223
234 D A 0.0000
235 L A 0.4729
236 R A -0.7256
237 Y A 0.0000
238 D A -1.1942
239 Q A -1.8061
240 F A 0.0000
241 I A 0.0000
242 D A -1.8210
243 P A -1.5387
244 G A -1.4034
245 P A -1.3084
246 R A -2.0536
247 T A -0.8240
248 G A 0.1933
249 I A 1.6006
250 T A 0.5292
251 T A -0.0875
252 G A -0.7144
253 V A 0.0000
254 S A -0.7516
255 D A -0.8599
256 Y A -0.5311
257 R A -0.7493
258 L A -0.4232
259 G A -1.0637
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Laboratory of Theory of Biopolymers 2018