Project name: Nb_G

Status: done

Started: 2026-03-13 18:54:20
Settings
Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASSPQWQKSKFLAGLWFRQAPGQGLEAVASYGENKETGLGSISRDPRFTISRDNSKNTLYLQMNSLRAEDTAVYYCALGPRLMEDKEQFQLATHWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:11)
Show buried residues

Minimal score value
-3.9579
Maximal score value
1.643
Average score
-0.7579
Total score value
-97.0149

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5560
2 V A 0.0000
3 Q A -1.2434
4 L A 0.0000
5 V A 1.1259
6 E A 0.3816
7 S A -0.1260
8 G A -0.7040
9 G A 0.0717
10 G A 0.8281
11 L A 1.2985
12 V A 0.0000
13 Q A -1.4682
14 P A -1.7131
15 G A -1.4504
16 G A -1.0032
17 S A -1.2944
18 L A -0.9481
19 R A -2.1459
20 L A 0.0000
21 S A -0.4680
22 C A 0.0000
23 A A -0.1541
24 A A 0.0000
25 S A -0.7230
26 S A 0.0000
27 P A -1.4292
28 Q A -2.4648
29 W A 0.0000
30 Q A -3.4630
31 K A -3.3101
32 S A -2.3969
33 K A -2.5671
34 F A 0.0000
35 L A -0.8223
36 A A 0.0000
37 G A 0.0000
38 L A 0.0000
39 W A 0.0000
40 F A 0.2751
41 R A -0.1146
42 Q A -0.4846
43 A A -0.9299
44 P A -1.0211
45 G A -1.1965
46 Q A -1.6600
47 G A -0.8165
48 L A 0.4767
49 E A -0.5056
50 A A -0.3428
51 V A 0.0000
52 A A 0.0000
53 S A 0.0000
54 Y A 0.3263
55 G A 0.0000
56 E A -1.6273
57 N A -2.9111
58 K A -3.2890
59 E A -3.0067
60 T A -1.7273
61 G A -1.2911
62 L A -0.0869
63 G A 0.2022
64 S A 0.6362
65 I A 1.3359
66 S A -0.2694
67 R A -1.7450
68 D A -1.1905
69 P A -0.8080
70 R A -1.0079
71 F A 0.0000
72 T A -0.6161
73 I A 0.0000
74 S A -0.5301
75 R A -1.2877
76 D A -2.1308
77 N A -2.9580
78 S A -2.1825
79 K A -2.7149
80 N A -2.3208
81 T A 0.0000
82 L A 0.0000
83 Y A 0.0000
84 L A 0.0000
85 Q A -1.3203
86 M A 0.0000
87 N A -1.4110
88 S A -1.2154
89 L A 0.0000
90 R A -2.5119
91 A A -1.8357
92 E A -2.2952
93 D A 0.0000
94 T A -0.5042
95 A A 0.0000
96 V A 0.7551
97 Y A 0.0000
98 Y A 0.4811
99 C A 0.0000
100 A A 0.0000
101 L A 0.0000
102 G A 0.0000
103 P A -0.8739
104 R A -1.2799
105 L A -1.0603
106 M A -2.1802
107 E A -3.7958
108 D A -3.8888
109 K A -3.9579
110 E A -3.6697
111 Q A -2.4278
112 F A -0.3571
113 Q A -0.5460
114 L A 1.2820
115 A A 0.0000
116 T A 0.3282
117 H A -0.0690
118 W A 0.2312
119 G A -0.1277
120 Q A -0.8418
121 G A 0.0848
122 T A 0.5733
123 L A 1.6430
124 V A 0.0000
125 T A 0.2994
126 V A 0.0000
127 S A -0.7438
128 S A -0.5139
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018