| Chain sequence(s) |
A: QVQLVESGGGLVQPGGSLRLSCAASSPQWQKSKFLAGLWFRQAPGQGLEAVASYGENKETGLGSISRDPRFTISRDNSKNTLYLQMNSLRAEDTAVYYCALGPRLMEDKEQFQLATHWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:10)
[INFO] Main: Simulation completed successfully. (00:02:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5560 | |
| 2 | V | A | 0.0000 | |
| 3 | Q | A | -1.2434 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1259 | |
| 6 | E | A | 0.3816 | |
| 7 | S | A | -0.1260 | |
| 8 | G | A | -0.7040 | |
| 9 | G | A | 0.0717 | |
| 10 | G | A | 0.8281 | |
| 11 | L | A | 1.2985 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.4682 | |
| 14 | P | A | -1.7131 | |
| 15 | G | A | -1.4504 | |
| 16 | G | A | -1.0032 | |
| 17 | S | A | -1.2944 | |
| 18 | L | A | -0.9481 | |
| 19 | R | A | -2.1459 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4680 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1541 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7230 | |
| 26 | S | A | 0.0000 | |
| 27 | P | A | -1.4292 | |
| 28 | Q | A | -2.4648 | |
| 29 | W | A | 0.0000 | |
| 30 | Q | A | -3.4630 | |
| 31 | K | A | -3.3101 | |
| 32 | S | A | -2.3969 | |
| 33 | K | A | -2.5671 | |
| 34 | F | A | 0.0000 | |
| 35 | L | A | -0.8223 | |
| 36 | A | A | 0.0000 | |
| 37 | G | A | 0.0000 | |
| 38 | L | A | 0.0000 | |
| 39 | W | A | 0.0000 | |
| 40 | F | A | 0.2751 | |
| 41 | R | A | -0.1146 | |
| 42 | Q | A | -0.4846 | |
| 43 | A | A | -0.9299 | |
| 44 | P | A | -1.0211 | |
| 45 | G | A | -1.1965 | |
| 46 | Q | A | -1.6600 | |
| 47 | G | A | -0.8165 | |
| 48 | L | A | 0.4767 | |
| 49 | E | A | -0.5056 | |
| 50 | A | A | -0.3428 | |
| 51 | V | A | 0.0000 | |
| 52 | A | A | 0.0000 | |
| 53 | S | A | 0.0000 | |
| 54 | Y | A | 0.3263 | |
| 55 | G | A | 0.0000 | |
| 56 | E | A | -1.6273 | |
| 57 | N | A | -2.9111 | |
| 58 | K | A | -3.2890 | |
| 59 | E | A | -3.0067 | |
| 60 | T | A | -1.7273 | |
| 61 | G | A | -1.2911 | |
| 62 | L | A | -0.0869 | |
| 63 | G | A | 0.2022 | |
| 64 | S | A | 0.6362 | |
| 65 | I | A | 1.3359 | |
| 66 | S | A | -0.2694 | |
| 67 | R | A | -1.7450 | |
| 68 | D | A | -1.1905 | |
| 69 | P | A | -0.8080 | |
| 70 | R | A | -1.0079 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.6161 | |
| 73 | I | A | 0.0000 | |
| 74 | S | A | -0.5301 | |
| 75 | R | A | -1.2877 | |
| 76 | D | A | -2.1308 | |
| 77 | N | A | -2.9580 | |
| 78 | S | A | -2.1825 | |
| 79 | K | A | -2.7149 | |
| 80 | N | A | -2.3208 | |
| 81 | T | A | 0.0000 | |
| 82 | L | A | 0.0000 | |
| 83 | Y | A | 0.0000 | |
| 84 | L | A | 0.0000 | |
| 85 | Q | A | -1.3203 | |
| 86 | M | A | 0.0000 | |
| 87 | N | A | -1.4110 | |
| 88 | S | A | -1.2154 | |
| 89 | L | A | 0.0000 | |
| 90 | R | A | -2.5119 | |
| 91 | A | A | -1.8357 | |
| 92 | E | A | -2.2952 | |
| 93 | D | A | 0.0000 | |
| 94 | T | A | -0.5042 | |
| 95 | A | A | 0.0000 | |
| 96 | V | A | 0.7551 | |
| 97 | Y | A | 0.0000 | |
| 98 | Y | A | 0.4811 | |
| 99 | C | A | 0.0000 | |
| 100 | A | A | 0.0000 | |
| 101 | L | A | 0.0000 | |
| 102 | G | A | 0.0000 | |
| 103 | P | A | -0.8739 | |
| 104 | R | A | -1.2799 | |
| 105 | L | A | -1.0603 | |
| 106 | M | A | -2.1802 | |
| 107 | E | A | -3.7958 | |
| 108 | D | A | -3.8888 | |
| 109 | K | A | -3.9579 | |
| 110 | E | A | -3.6697 | |
| 111 | Q | A | -2.4278 | |
| 112 | F | A | -0.3571 | |
| 113 | Q | A | -0.5460 | |
| 114 | L | A | 1.2820 | |
| 115 | A | A | 0.0000 | |
| 116 | T | A | 0.3282 | |
| 117 | H | A | -0.0690 | |
| 118 | W | A | 0.2312 | |
| 119 | G | A | -0.1277 | |
| 120 | Q | A | -0.8418 | |
| 121 | G | A | 0.0848 | |
| 122 | T | A | 0.5733 | |
| 123 | L | A | 1.6430 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | 0.2994 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -0.7438 | |
| 128 | S | A | -0.5139 |