Project name: esmif

Status: done

Started: 2026-04-21 04:42:33
Settings
Chain sequence(s) A: SNAMSYKQGKISIKDSDTDTADYHLEAGDFFRSFGEDDSARLQYEKSLSFKQDESSKSKIKDQFPE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:39)
Show buried residues

Minimal score value
-3.5072
Maximal score value
0.4602
Average score
-1.8107
Total score value
-119.5065

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -2.2101
2 N A -2.7436
3 A A -1.6994
4 M A -0.4669
5 S A -0.2944
6 Y A -0.6305
7 K A -2.6288
8 Q A -2.5896
9 G A -2.0108
10 K A -2.5325
11 I A -0.6948
12 S A -0.6546
13 I A -0.5369
14 K A -2.7670
15 D A -3.5072
16 S A -3.1767
17 D A -3.3032
18 T A -2.4896
19 D A -2.4312
20 T A -1.7054
21 A A -2.0673
22 D A -2.4855
23 Y A -2.4106
24 H A -1.7789
25 L A -1.9370
26 E A -2.5363
27 A A 0.0000
28 G A 0.0000
29 D A -2.0564
30 F A -0.6289
31 F A 0.0000
32 R A -2.0293
33 S A -0.4730
34 F A 0.4602
35 G A -1.2682
36 E A -2.4247
37 D A -3.2829
38 D A -2.8456
39 S A -1.7470
40 A A 0.0000
41 R A -1.8667
42 L A -0.3468
43 Q A -1.3687
44 Y A 0.0000
45 E A -1.8705
46 K A -1.7395
47 S A 0.0000
48 L A -2.0566
49 S A -1.1311
50 F A -0.8177
51 K A -2.3340
52 Q A -2.7101
53 D A -2.5521
54 E A -2.9547
55 S A -1.9966
56 S A 0.0000
57 K A -3.1480
58 S A -2.5969
59 K A -2.5296
60 I A -2.5405
61 K A -3.4529
62 D A -3.4246
63 Q A -2.6477
64 F A -2.2362
65 P A -2.2066
66 E A -2.3938
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018