| Chain sequence(s) |
A: SNAMSYKQGKISIKDSDTDTADYHLEAGDFFRSFGEDDSARLQYEKSLSFKQDESSKSKIKDQFPE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:39)
[INFO] Main: Simulation completed successfully. (00:01:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | -2.2101 | |
| 2 | N | A | -2.7436 | |
| 3 | A | A | -1.6994 | |
| 4 | M | A | -0.4669 | |
| 5 | S | A | -0.2944 | |
| 6 | Y | A | -0.6305 | |
| 7 | K | A | -2.6288 | |
| 8 | Q | A | -2.5896 | |
| 9 | G | A | -2.0108 | |
| 10 | K | A | -2.5325 | |
| 11 | I | A | -0.6948 | |
| 12 | S | A | -0.6546 | |
| 13 | I | A | -0.5369 | |
| 14 | K | A | -2.7670 | |
| 15 | D | A | -3.5072 | |
| 16 | S | A | -3.1767 | |
| 17 | D | A | -3.3032 | |
| 18 | T | A | -2.4896 | |
| 19 | D | A | -2.4312 | |
| 20 | T | A | -1.7054 | |
| 21 | A | A | -2.0673 | |
| 22 | D | A | -2.4855 | |
| 23 | Y | A | -2.4106 | |
| 24 | H | A | -1.7789 | |
| 25 | L | A | -1.9370 | |
| 26 | E | A | -2.5363 | |
| 27 | A | A | 0.0000 | |
| 28 | G | A | 0.0000 | |
| 29 | D | A | -2.0564 | |
| 30 | F | A | -0.6289 | |
| 31 | F | A | 0.0000 | |
| 32 | R | A | -2.0293 | |
| 33 | S | A | -0.4730 | |
| 34 | F | A | 0.4602 | |
| 35 | G | A | -1.2682 | |
| 36 | E | A | -2.4247 | |
| 37 | D | A | -3.2829 | |
| 38 | D | A | -2.8456 | |
| 39 | S | A | -1.7470 | |
| 40 | A | A | 0.0000 | |
| 41 | R | A | -1.8667 | |
| 42 | L | A | -0.3468 | |
| 43 | Q | A | -1.3687 | |
| 44 | Y | A | 0.0000 | |
| 45 | E | A | -1.8705 | |
| 46 | K | A | -1.7395 | |
| 47 | S | A | 0.0000 | |
| 48 | L | A | -2.0566 | |
| 49 | S | A | -1.1311 | |
| 50 | F | A | -0.8177 | |
| 51 | K | A | -2.3340 | |
| 52 | Q | A | -2.7101 | |
| 53 | D | A | -2.5521 | |
| 54 | E | A | -2.9547 | |
| 55 | S | A | -1.9966 | |
| 56 | S | A | 0.0000 | |
| 57 | K | A | -3.1480 | |
| 58 | S | A | -2.5969 | |
| 59 | K | A | -2.5296 | |
| 60 | I | A | -2.5405 | |
| 61 | K | A | -3.4529 | |
| 62 | D | A | -3.4246 | |
| 63 | Q | A | -2.6477 | |
| 64 | F | A | -2.2362 | |
| 65 | P | A | -2.2066 | |
| 66 | E | A | -2.3938 |