| Chain sequence(s) |
A: FKFEKGH
C: FKFEKGH B: FKFEKGH D: FKFEKGH input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:38)
[INFO] Main: Simulation completed successfully. (00:01:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 0.1663 | |
| 2 | K | A | -1.7739 | |
| 3 | F | A | -1.3005 | |
| 4 | E | A | -2.5532 | |
| 5 | K | A | -1.9244 | |
| 6 | G | A | -1.6053 | |
| 7 | H | A | -1.1629 | |
| 1 | F | B | 0.3011 | |
| 2 | K | B | -1.4533 | |
| 3 | F | B | -0.9368 | |
| 4 | E | B | -2.1432 | |
| 5 | K | B | -2.1214 | |
| 6 | G | B | -1.7366 | |
| 7 | H | B | -1.2700 | |
| 1 | F | C | 0.5043 | |
| 2 | K | C | -0.9056 | |
| 3 | F | C | -0.9482 | |
| 4 | E | C | -2.4248 | |
| 5 | K | C | -2.3450 | |
| 6 | G | C | -1.8229 | |
| 7 | H | C | -1.2478 | |
| 1 | F | D | 0.1281 | |
| 2 | K | D | -1.5407 | |
| 3 | F | D | -1.0367 | |
| 4 | E | D | -2.1633 | |
| 5 | K | D | -2.0443 | |
| 6 | G | D | -1.6640 | |
| 7 | H | D | -1.2235 |