Project name: query_structure

Status: done

Started: 2026-03-16 21:24:33
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Chain sequence(s) A: RAGPGFLGNVLVDPTAVIGQNCTIGPNVTIGAGVVLEDGVRVKRCTILKGAHIRSHSWLESCIVGWSSSVGQWVRMENVTVLGEDVIVNDELYINGANVLPHKSITDSVPEPRIIM
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:10)
Show buried residues

Minimal score value
-2.6079
Maximal score value
1.8718
Average score
-0.5707
Total score value
-66.2027

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.5283
2 A A -0.7719
3 G A -0.5380
4 P A -0.3530
5 G A -0.6247
6 F A -0.1976
7 L A -0.0640
8 G A -0.9864
9 N A -1.7095
10 V A -0.6533
11 L A 0.6027
12 V A 0.3488
13 D A -0.3679
14 P A -0.2565
15 T A -0.0355
16 A A 0.0000
17 V A 1.8718
18 I A 0.6410
19 G A -0.9173
20 Q A -2.2177
21 N A -2.3802
22 C A 0.0000
23 T A -0.6797
24 I A 0.0000
25 G A 0.0000
26 P A -1.4433
27 N A -2.0427
28 V A 0.0000
29 T A 0.0090
30 I A 0.0000
31 G A -0.4651
32 A A -0.5945
33 G A -0.5178
34 V A 0.0000
35 V A 0.5274
36 L A 0.0000
37 E A -1.3747
38 D A -2.2407
39 G A 0.0000
40 V A 0.0000
41 R A -1.4079
42 V A 0.0000
43 K A -1.5611
44 R A -1.9446
45 C A 0.0000
46 T A -0.1870
47 I A 0.0000
48 L A -0.4339
49 K A -1.6658
50 G A -1.1483
51 A A 0.0000
52 H A -0.2450
53 I A 0.0000
54 R A -1.2034
55 S A -1.5314
56 H A -1.6179
57 S A 0.0000
58 W A -0.7661
59 L A 0.0000
60 E A -1.1681
61 S A -0.6107
62 C A 0.0000
63 I A 1.0571
64 V A 0.0000
65 G A 0.0000
66 W A -0.3673
67 S A -0.9240
68 S A 0.0000
69 S A -0.3273
70 V A 0.0000
71 G A 0.0000
72 Q A -1.5291
73 W A -0.7236
74 V A 0.0000
75 R A -1.5758
76 M A 0.0000
77 E A -0.9463
78 N A -0.9036
79 V A 0.9476
80 T A 0.0000
81 V A 0.9265
82 L A 0.0000
83 G A -0.5277
84 E A -1.4516
85 D A -1.4943
86 V A 0.0000
87 I A -0.3304
88 V A 0.0000
89 N A -2.0315
90 D A -2.2742
91 E A -2.6079
92 L A 0.0000
93 Y A -1.3228
94 I A 0.0000
95 N A -1.4956
96 G A -0.8425
97 A A 0.0000
98 N A 0.4560
99 V A 0.0000
100 L A 0.2666
101 P A -0.9323
102 H A -1.5983
103 K A -0.9640
104 S A -0.8769
105 I A 0.0000
106 T A -1.6314
107 D A -2.3742
108 S A -1.8213
109 V A 0.0000
110 P A -1.6648
111 E A -2.4696
112 P A -1.7534
113 R A -1.2929
114 I A 1.2223
115 I A 1.1120
116 M A 1.3146
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Laboratory of Theory of Biopolymers 2018