Project name: 27.A8F8

Status: done

Started: 2026-07-07 08:44:42
Settings
Chain sequence(s) H: QVQLQQPGAEFVRPGASVKLSCKASGYTFTNYWIHWVKQRPGRGLEWIGRIIPYSGDTNYNERFKSRATLTSAKSSSTAYMQLSSLTSEDSAVYFCARPDYWGQGTTLTVSS
L: DIQMTQSPSSLSASLGERVSLTCRASHEISKYLSWLQQKPDGTIKRLINAAVILDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:26)
Show buried residues

Minimal score value
-3.3983
Maximal score value
2.3946
Average score
-0.5886
Total score value
-128.8996

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4301
2 V H -0.9003
3 Q H -1.5085
4 L H 0.0000
5 Q H -1.9069
6 Q H -1.3854
7 P H -1.0970
8 G H -1.0521
9 A H -0.1841
11 E H -0.2629
12 F H 1.1386
13 V H -0.1761
14 R H -1.7077
15 P H -1.4289
16 G H -1.1524
17 A H -0.9087
18 S H -1.1121
19 V H 0.0000
20 K H -1.9468
21 L H 0.0000
22 S H -0.8143
23 C H 0.0000
24 K H -1.4528
25 A H 0.0000
26 S H -1.0472
27 G H -0.8873
28 Y H -0.4390
29 T H -0.2235
30 F H 0.0000
35 T H -0.0439
36 N H -0.5401
37 Y H 0.4159
38 W H 0.4224
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.9959
45 R H -1.6858
46 P H -1.2717
47 G H -1.6542
48 R H -2.5525
49 G H -1.5859
50 L H 0.0000
51 E H -0.7475
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 R H -0.3535
56 I H 0.0000
57 I H 0.0997
58 P H 0.0000
59 Y H 0.6434
62 S H -0.2828
63 G H -0.7783
64 D H -1.6216
65 T H -1.0322
66 N H -1.0977
67 Y H -1.1776
68 N H 0.0000
69 E H -3.3983
70 R H -3.2330
71 F H 0.0000
72 K H -3.0327
74 S H -1.8576
75 R H -1.4817
76 A H 0.0000
77 T H -0.8491
78 L H 0.0000
79 T H -0.5670
80 S H -0.4384
81 A H -0.7234
82 K H -1.1022
83 S H -0.8183
84 S H -0.7418
85 S H -0.8172
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3224
89 M H 0.0000
90 Q H -1.1996
91 L H 0.0000
92 S H -0.8710
93 S H -0.8605
94 L H 0.0000
95 T H -1.2831
96 S H -1.4703
97 E H -2.0286
98 D H 0.0000
99 S H -0.6645
100 A H 0.0000
101 V H -0.1220
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 P H -0.0292
116 D H -0.3386
117 Y H 0.0880
118 W H -0.3518
119 G H 0.0000
120 Q H -1.7415
121 G H 0.0000
122 T H 0.0000
123 T H -0.1818
124 L H 0.0000
125 T H -0.0349
126 V H 0.0000
127 S H -0.5615
128 S H -0.7577
1 D L -2.3083
2 I L 0.0000
3 Q L -2.2189
4 M L 0.0000
5 T L -1.3345
6 Q L -1.0591
7 S L -0.8481
8 P L -0.5875
9 S L -0.8635
10 S L -0.9014
11 L L -0.2749
12 S L -0.3869
13 A L 0.0000
14 S L -0.4359
15 L L 0.0527
16 G L -1.0972
17 E L -1.7135
18 R L -2.2820
19 V L 0.0000
20 S L -0.7098
21 L L 0.0000
22 T L -0.8046
23 C L 0.0000
24 R L -2.7992
25 A L 0.0000
26 S L -2.1362
27 H L -2.5441
28 E L -2.3451
29 I L 0.0000
36 S L -0.8322
37 K L -0.6221
38 Y L 0.7181
39 L L 0.0000
40 S L 0.0000
41 W L 0.0000
42 L L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.6208
46 P L -1.4331
47 D L -2.2686
48 G L -1.5559
49 T L -1.3228
50 I L 0.0000
51 K L -0.9859
52 R L -0.7625
53 L L 0.0000
54 I L 0.0000
55 N L 0.7344
56 A L 0.8611
57 A L 0.0000
65 V L 1.5662
66 I L 2.3946
67 L L 0.9094
68 D L -0.1102
69 S L -0.3181
70 G L -0.8347
71 V L 0.0000
72 P L -1.1198
74 K L -1.9308
75 R L -1.5632
76 F L 0.0000
77 S L -0.0291
78 G L 0.4727
79 S L -0.2206
80 R L -1.2891
83 S L -1.1272
84 G L -1.3050
85 S L -1.9130
86 D L -1.6915
87 Y L 0.0000
88 S L -0.6187
89 L L 0.0000
90 T L -0.6819
91 I L 0.0000
92 S L -1.6110
93 S L -1.3987
94 L L 0.0000
95 E L -1.7124
96 S L -1.0771
97 E L -1.9694
98 D L 0.0000
99 F L -0.5671
100 A L 0.0000
101 D L -1.3296
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.2710
106 Q L 0.0000
107 Y L 0.7900
108 A L 0.1765
109 S L 0.0429
114 Y L 0.1052
115 P L -0.7066
116 W L 0.0607
117 T L -0.3769
118 F L -0.1509
119 G L 0.0000
120 G L -1.0794
121 G L -1.1799
122 T L 0.0000
123 K L -1.7395
124 L L 0.0000
125 E L -0.2462
126 I L 1.1421
127 K L -0.7280
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018