Project name: beta2microglobin

Status: done

Started: 2025-07-27 21:52:12
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Chain sequence(s) A: MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:21)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:22)
Show buried residues

Minimal score value
-3.4572
Maximal score value
1.4788
Average score
-1.1014
Total score value
-110.1399

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
0 M A 1.4495
1 I A 1.4788
2 Q A -0.4455
3 R A -1.5870
4 T A -1.1270
5 P A -1.0127
6 K A -1.6789
7 I A -0.1913
8 Q A -0.1133
9 V A 0.0000
10 Y A -0.5557
11 S A -1.2909
12 R A -1.5101
13 H A -1.6785
14 P A -1.5854
15 A A -2.0357
16 E A -2.8504
17 N A -3.4572
18 G A -2.5771
19 K A -3.0038
20 S A -2.1407
21 N A 0.0000
22 F A -0.9144
23 L A 0.0000
24 N A 0.0000
25 C A 0.0000
26 Y A 0.3517
27 V A 0.0000
28 S A -0.3117
29 G A -0.5918
30 F A 0.0000
31 H A -0.4295
32 P A -0.5317
33 S A -0.6973
34 D A -1.6775
35 I A -1.0818
36 E A -1.8367
37 V A 0.0000
38 D A -1.2870
39 L A 0.0000
40 L A -1.8175
41 K A -2.2989
42 N A -2.7611
43 G A -2.4383
44 E A -3.3433
45 R A -3.4270
46 I A -2.5799
47 E A -3.3140
48 K A -3.1832
49 V A -2.2805
50 E A -2.8186
51 H A -1.6263
52 S A -1.2491
53 D A -1.7549
54 L A -0.0148
55 S A -0.1838
56 F A 0.1671
57 S A -0.7395
58 K A -2.0095
59 D A -1.8511
60 W A 0.0619
61 S A -0.1941
62 F A 0.3035
63 Y A 0.4565
64 L A 0.2535
65 L A -0.2580
66 Y A 0.0000
67 Y A -0.8171
68 T A 0.0000
69 E A -2.0779
70 F A 0.0000
71 T A -1.7706
72 P A 0.0000
73 T A -2.6009
74 E A -3.3702
75 K A -3.1950
76 D A 0.0000
77 E A -2.9447
78 Y A 0.0000
79 A A 0.0000
80 C A 0.0000
81 R A -0.8920
82 V A 0.0000
83 N A -1.1366
84 H A 0.0000
85 V A 0.3552
86 T A 0.0383
87 L A 0.0000
88 S A -0.6874
89 Q A -1.4831
90 P A -1.3135
91 K A -1.6422
92 I A 0.0013
93 V A -0.4279
94 K A -2.1848
95 W A 0.0000
96 D A -3.3138
97 R A -3.2762
98 D A -2.6751
99 M A -0.9042
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Laboratory of Theory of Biopolymers 2018