Project name: 7381b61bd751647 [mutate: VS3A]

Status: done

Started: 2024-07-03 03:01:11
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Chain sequence(s) A: MAVLVLLFCLVTFPSCVLSQVQLKQSGPGLVQPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEWLGVIWSGGSTDYNAAFISRLSISKDNSKSQVFFKMNSLQADDTAIYYCAK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VS3A
Energy difference between WT (input) and mutated protein (by FoldX) 0.123006 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:21)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:23)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:41)
Show buried residues

Minimal score value
-2.4888
Maximal score value
5.4876
Average score
0.066
Total score value
7.6523

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.8225
2 A A 1.7882
3 S A 2.1347 mutated: VS3A
4 L A 3.3783
5 V A 4.5285
6 L A 4.7122
7 L A 4.8431
8 F A 5.4876
9 C A 4.7471
10 L A 4.6723
11 V A 4.2357
12 T A 2.9276
13 F A 3.0762
14 P A 1.5618
15 S A 1.6627
16 C A 2.1839
17 V A 2.5245
18 L A 2.2414
19 S A 0.6016
20 Q A -0.5363
21 V A -0.3188
22 Q A -1.6445
23 L A -1.2210
24 K A -2.1446
25 Q A -1.5311
26 S A -1.1676
27 G A -0.6348
28 P A -0.1513
29 G A 0.1304
30 L A 1.0764
31 V A -0.0679
32 Q A -1.3721
33 P A -1.7785
34 S A -1.6950
35 Q A -2.1041
36 S A -1.9456
37 L A 0.0000
38 S A -1.0479
39 I A 0.0000
40 T A -0.7862
41 C A 0.0000
42 T A -1.3325
43 V A 0.0000
44 S A -0.8419
45 G A -0.4408
46 F A -0.2131
47 S A -0.2798
48 L A 0.0000
49 T A -0.3655
50 S A 0.2164
51 Y A 0.5320
52 G A -0.0677
53 V A 0.0000
54 H A -0.4574
55 W A 0.0000
56 V A 0.9147
57 R A 0.0000
58 Q A 0.2417
59 P A 0.0000
60 P A -1.0393
61 G A -1.5597
62 K A -2.0646
63 G A -0.8809
64 L A 0.9646
65 E A -0.0287
66 W A 0.5033
67 L A 0.0000
68 G A 0.0000
69 V A 0.0000
70 I A 0.0000
71 W A -0.0249
72 S A -0.0824
73 G A -0.4147
74 G A -0.7024
75 S A -0.6130
76 T A -0.7475
77 D A -0.9472
78 Y A 0.0601
79 N A 0.1153
80 A A 0.4260
81 A A 0.4321
82 F A 0.0000
83 I A 1.4009
84 S A 0.2698
85 R A -0.6778
86 L A 0.0000
87 S A -0.5959
88 I A 0.0000
89 S A -0.6907
90 K A -1.1924
91 D A -1.8483
92 N A -2.3720
93 S A -1.8797
94 K A -2.4888
95 S A -1.7483
96 Q A -1.6067
97 V A 0.0000
98 F A -0.3572
99 F A 0.0000
100 K A -1.7763
101 M A 0.0000
102 N A -2.3921
103 S A -1.7942
104 L A 0.0000
105 Q A -2.3875
106 A A -1.6361
107 D A -2.2222
108 D A 0.0000
109 T A -0.3343
110 A A 0.4185
111 I A 2.1810
112 Y A 1.2735
113 Y A 0.8430
114 C A 0.0000
115 A A -0.8100
116 K A -1.4155
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Laboratory of Theory of Biopolymers 2018