Chain sequence(s) |
A: MAVLVLLFCLVTFPSCVLSQVQLKQSGPGLVQPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEWLGVIWSGGSTDYNAAFISRLSISKDNSKSQVFFKMNSLQADDTAIYYCAK
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | VS3A |
Energy difference between WT (input) and mutated protein (by FoldX) | 0.123006 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:21) [INFO] FoldX: Starting FoldX energy minimalization (00:00:23) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:41) [INFO] Main: Simulation completed successfully. (00:00:41) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | M | A | 1.8225 | |
2 | A | A | 1.7882 | |
3 | S | A | 2.1347 | mutated: VS3A |
4 | L | A | 3.3783 | |
5 | V | A | 4.5285 | |
6 | L | A | 4.7122 | |
7 | L | A | 4.8431 | |
8 | F | A | 5.4876 | |
9 | C | A | 4.7471 | |
10 | L | A | 4.6723 | |
11 | V | A | 4.2357 | |
12 | T | A | 2.9276 | |
13 | F | A | 3.0762 | |
14 | P | A | 1.5618 | |
15 | S | A | 1.6627 | |
16 | C | A | 2.1839 | |
17 | V | A | 2.5245 | |
18 | L | A | 2.2414 | |
19 | S | A | 0.6016 | |
20 | Q | A | -0.5363 | |
21 | V | A | -0.3188 | |
22 | Q | A | -1.6445 | |
23 | L | A | -1.2210 | |
24 | K | A | -2.1446 | |
25 | Q | A | -1.5311 | |
26 | S | A | -1.1676 | |
27 | G | A | -0.6348 | |
28 | P | A | -0.1513 | |
29 | G | A | 0.1304 | |
30 | L | A | 1.0764 | |
31 | V | A | -0.0679 | |
32 | Q | A | -1.3721 | |
33 | P | A | -1.7785 | |
34 | S | A | -1.6950 | |
35 | Q | A | -2.1041 | |
36 | S | A | -1.9456 | |
37 | L | A | 0.0000 | |
38 | S | A | -1.0479 | |
39 | I | A | 0.0000 | |
40 | T | A | -0.7862 | |
41 | C | A | 0.0000 | |
42 | T | A | -1.3325 | |
43 | V | A | 0.0000 | |
44 | S | A | -0.8419 | |
45 | G | A | -0.4408 | |
46 | F | A | -0.2131 | |
47 | S | A | -0.2798 | |
48 | L | A | 0.0000 | |
49 | T | A | -0.3655 | |
50 | S | A | 0.2164 | |
51 | Y | A | 0.5320 | |
52 | G | A | -0.0677 | |
53 | V | A | 0.0000 | |
54 | H | A | -0.4574 | |
55 | W | A | 0.0000 | |
56 | V | A | 0.9147 | |
57 | R | A | 0.0000 | |
58 | Q | A | 0.2417 | |
59 | P | A | 0.0000 | |
60 | P | A | -1.0393 | |
61 | G | A | -1.5597 | |
62 | K | A | -2.0646 | |
63 | G | A | -0.8809 | |
64 | L | A | 0.9646 | |
65 | E | A | -0.0287 | |
66 | W | A | 0.5033 | |
67 | L | A | 0.0000 | |
68 | G | A | 0.0000 | |
69 | V | A | 0.0000 | |
70 | I | A | 0.0000 | |
71 | W | A | -0.0249 | |
72 | S | A | -0.0824 | |
73 | G | A | -0.4147 | |
74 | G | A | -0.7024 | |
75 | S | A | -0.6130 | |
76 | T | A | -0.7475 | |
77 | D | A | -0.9472 | |
78 | Y | A | 0.0601 | |
79 | N | A | 0.1153 | |
80 | A | A | 0.4260 | |
81 | A | A | 0.4321 | |
82 | F | A | 0.0000 | |
83 | I | A | 1.4009 | |
84 | S | A | 0.2698 | |
85 | R | A | -0.6778 | |
86 | L | A | 0.0000 | |
87 | S | A | -0.5959 | |
88 | I | A | 0.0000 | |
89 | S | A | -0.6907 | |
90 | K | A | -1.1924 | |
91 | D | A | -1.8483 | |
92 | N | A | -2.3720 | |
93 | S | A | -1.8797 | |
94 | K | A | -2.4888 | |
95 | S | A | -1.7483 | |
96 | Q | A | -1.6067 | |
97 | V | A | 0.0000 | |
98 | F | A | -0.3572 | |
99 | F | A | 0.0000 | |
100 | K | A | -1.7763 | |
101 | M | A | 0.0000 | |
102 | N | A | -2.3921 | |
103 | S | A | -1.7942 | |
104 | L | A | 0.0000 | |
105 | Q | A | -2.3875 | |
106 | A | A | -1.6361 | |
107 | D | A | -2.2222 | |
108 | D | A | 0.0000 | |
109 | T | A | -0.3343 | |
110 | A | A | 0.4185 | |
111 | I | A | 2.1810 | |
112 | Y | A | 1.2735 | |
113 | Y | A | 0.8430 | |
114 | C | A | 0.0000 | |
115 | A | A | -0.8100 | |
116 | K | A | -1.4155 |