Project name: 345f022b6e7844b

Status: done

Started: 2025-06-03 05:15:33
Settings
Chain sequence(s) H: EVQLVQSGAEVKKPGASVKVSCKASGYRFTNYWIHWVRQAPGQGLEWIGGINPGNNYATYRRKFQGRVTMTADTSTSTVYMELSSLRSEDTAVYYCTREGYGNYGAWFAYWGQGTLVTVSS
L: DVQVTQSPSSLSASVGDRVTITCRSSQSLANSYGNTFLSWYLHKPGKAPQLLIYGISNRFSGVPDRFSGSGSGTDFTLTISSLQPEDFATYYCLQGTHQPYTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:35)
Show buried residues

Minimal score value
-3.4334
Maximal score value
1.039
Average score
-0.632
Total score value
-147.2636

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9807
2 V H -1.1119
3 Q H -0.8721
4 L H 0.0000
5 V H 0.7538
6 Q H 0.0000
7 S H -0.3962
8 G H -0.4075
9 A H 0.2928
11 E H 0.1227
12 V H 0.9998
13 K H -0.9750
14 K H -2.1954
15 P H -2.3068
16 G H -1.6110
17 A H -1.2624
18 S H -1.4363
19 V H 0.0000
20 K H -2.0868
21 V H 0.0000
22 S H -0.4505
23 C H 0.0000
24 K H -0.5530
25 A H 0.0000
26 S H -1.0129
27 G H -1.4496
28 Y H -1.4176
29 R H -2.1801
30 F H 0.0000
35 T H -1.5886
36 N H -1.5385
37 Y H -0.4152
38 W H 0.3073
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5457
45 A H -0.9273
46 P H -1.0424
47 G H -1.2284
48 Q H -1.8705
49 G H -1.3762
50 L H 0.0000
51 E H -0.8039
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 N H -0.5488
58 P H 0.0000
59 G H -1.5885
62 N H -1.5994
63 N H -0.9337
64 Y H 0.4586
65 A H 0.3066
66 T H -0.3134
67 Y H -1.2302
68 R H -2.2610
69 R H -3.4334
70 K H -3.0617
71 F H 0.0000
72 Q H -2.7098
74 G H -1.7464
75 R H -1.6269
76 V H 0.0000
77 T H -0.8108
78 M H 0.0000
79 T H -0.1945
80 A H 0.0000
81 D H -0.8544
82 T H -0.9379
83 S H -0.4412
84 T H -0.5293
85 S H -0.8210
86 T H 0.0000
87 V H 0.0000
88 Y H -0.4769
89 M H 0.0000
90 E H -1.5629
91 L H 0.0000
92 S H -1.1788
93 S H -1.2454
94 L H 0.0000
95 R H -3.1365
96 S H -2.3401
97 E H -2.4922
98 D H 0.0000
99 T H -0.6711
100 A H 0.0000
101 V H 0.6357
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0000
107 E H 0.0000
108 G H 0.5018
109 Y H 0.7175
110 G H -0.2108
111 N H -0.7620
112A Y H 0.1085
112 G H 0.0000
113 A H 0.2473
114 W H 0.0000
115 F H 0.0000
116 A H 0.3397
117 Y H 0.2627
118 W H -0.0621
119 G H 0.0000
120 Q H -1.1148
121 G H -0.3612
122 T H 0.0000
123 L H 1.0390
124 V H 0.0000
125 T H -0.0547
126 V H 0.0000
127 S H -0.9495
128 S H -1.0408
1 D L -2.7976
2 V L 0.0000
3 Q L -2.3883
4 V L 0.0000
5 T L -1.4443
6 Q L 0.0000
7 S L -0.9186
8 P L -0.6876
9 S L -0.9786
10 S L -1.0584
11 L L -0.7678
12 S L -0.7376
13 A L -0.8876
14 S L -0.8097
15 V L 0.0183
16 G L -0.9108
17 D L -1.9236
18 R L -2.3740
19 V L 0.0000
20 T L -0.6615
21 I L 0.0000
22 T L -0.7370
23 C L 0.0000
24 R L -2.6252
25 S L 0.0000
26 S L -1.9890
27 Q L -2.2237
28 S L -1.2775
29 L L 0.0000
30 A L -0.5224
31 N L -0.3853
32 S L 0.0074
34 Y L 0.7349
35 G L -0.2070
36 N L -0.2066
37 T L 0.0000
38 F L 0.1135
39 L L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 H L -0.9513
45 K L -1.3301
46 P L -1.0419
47 G L -1.6363
48 K L -2.4412
49 A L -1.4574
50 P L 0.0000
51 Q L -0.8671
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1251
56 G L -0.0419
57 I L -0.1585
65 S L -0.4932
66 N L -0.5661
67 R L -1.2338
68 F L -0.5938
69 S L -0.5087
70 G L -0.8654
71 V L 0.0000
72 P L -1.3334
74 D L -2.1995
75 R L -1.6788
76 F L 0.0000
77 S L -0.8895
78 G L 0.0000
79 S L -0.5098
80 G L -0.8163
83 S L -0.8302
84 G L -1.0109
85 T L -1.4973
86 D L -1.7511
87 F L 0.0000
88 T L -0.5861
89 L L 0.0000
90 T L -0.6201
91 I L 0.0000
92 S L -1.7373
93 S L -1.3263
94 L L 0.0000
95 Q L -0.9525
96 P L -1.0723
97 E L -1.7057
98 D L 0.0000
99 F L -0.3743
100 A L 0.0000
101 T L -0.8988
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 Q L 0.0000
107 G L -0.4073
108 T L 0.0000
109 H L -1.4895
114 Q L -1.7379
115 P L 0.0000
116 Y L 0.0000
117 T L -1.0668
118 F L 0.0000
119 G L 0.0000
120 Q L -1.8316
121 G L 0.0000
122 T L 0.0000
123 K L -1.7485
124 V L 0.0000
125 E L -1.1798
126 I L -0.6890
127 K L -1.3650
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Laboratory of Theory of Biopolymers 2018