Project name: query_structure

Status: done

Started: 2026-03-16 21:22:38
Settings
Chain sequence(s) A: MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYMHLKVFKSLPGQNEDLVLTGYQVDKKDDELTGF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:03)
Show buried residues

Minimal score value
-4.1822
Maximal score value
2.2388
Average score
-1.152
Total score value
-111.7475

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.6588
2 I A 2.2388
3 P A 1.0924
4 G A 0.6778
5 G A 0.5751
6 L A 0.1259
7 S A -0.4924
8 E A -1.9593
9 A A -1.7993
10 K A -1.5776
11 P A -0.7799
12 A A -0.9344
13 T A -1.2403
14 P A -1.7456
15 E A -2.8619
16 I A 0.0000
17 Q A -2.7568
18 E A -3.9349
19 I A 0.0000
20 V A 0.0000
21 D A -4.1822
22 K A -3.3560
23 V A 0.0000
24 K A -2.7419
25 P A -2.1958
26 Q A -2.1093
27 L A 0.0000
28 E A -3.0107
29 E A -3.7237
30 K A -3.2329
31 T A -2.6007
32 N A -3.3402
33 E A -3.1877
34 T A -1.8814
35 Y A -1.3399
36 G A -1.6572
37 K A -2.7175
38 L A 0.0000
39 E A -2.3349
40 A A -1.5999
41 V A -0.3378
42 Q A -1.0968
43 Y A 0.0000
44 K A -1.1057
45 T A -0.0835
46 Q A 0.6080
47 V A 1.9798
48 V A 1.7416
49 A A 1.0843
50 G A 0.0000
51 T A 0.9904
52 N A 0.5057
53 Y A 0.0841
54 Y A 0.0000
55 I A 0.0000
56 K A -1.0238
57 V A 0.0000
58 R A -2.5305
59 A A -1.9756
60 G A -2.5300
61 D A -2.9233
62 N A -3.2982
63 K A -2.8903
64 Y A -2.5995
65 M A 0.0000
66 H A 0.0000
67 L A 0.0000
68 K A 0.0256
69 V A 0.0000
70 F A 0.2393
71 K A -0.8889
72 S A -1.1772
73 L A -0.2758
74 P A -1.2368
75 G A -1.5583
76 Q A -2.6792
77 N A -3.2163
78 E A -3.4286
79 D A -2.8962
80 L A -1.2587
81 V A -0.1556
82 L A 0.0000
83 T A 0.3669
84 G A 0.1737
85 Y A 0.4856
86 Q A 0.1435
87 V A -0.0260
88 D A -2.5065
89 K A -3.0410
90 K A -3.6665
91 D A -3.7403
92 D A -3.8589
93 E A -3.2689
94 L A 0.0000
95 T A -0.6880
96 G A -0.1421
97 F A 0.8543
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018