Project name: ME2

Status: done

Started: 2026-03-03 18:36:15
Settings
Chain sequence(s) A: MGGSMEFIPTQTFYNRRYQPRPWTPRPTIEAAAKHSCHSPVALERIRNEATDGTEAAAKRIRNEATDGTLKIQVSLQIGEAAAKADAERAGLFVRTSAPCTITGEAAAKPKGETLTVGFTDSRKISHSCEAAAKTVRYKCNCGGSNEGLTTTDKEAAAKHPTLLSYRNMGEEPNYQEEWVMHKKEAAAKPTEGLEVTWGNNEPYKYWPQLSTNGTEAAAKAEEEREAELTREALPPLQEAAAKIQMRTQVELLDEHISIDCRSHHHHHH
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:48)
Show buried residues

Minimal score value
-5.5987
Maximal score value
1.7512
Average score
-1.4528
Total score value
-390.7945

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.6755
2 G A -0.3053
3 G A -0.6536
4 S A -0.6766
5 M A 0.2830
6 E A -0.2175
7 F A 1.7512
8 I A 1.1691
9 P A 0.5496
10 T A -0.2598
11 Q A -0.6426
12 T A -1.0382
13 F A 0.0000
14 Y A -1.1524
15 N A 0.0000
16 R A -3.0311
17 R A -2.7874
18 Y A -1.3935
19 Q A -2.1612
20 P A -1.7167
21 R A -2.5329
22 P A -1.5132
23 W A -0.6241
24 T A -0.7431
25 P A -0.5723
26 R A -1.5003
27 P A -1.3058
28 T A -0.8941
29 I A -1.2203
30 E A -2.3145
31 A A -1.5849
32 A A -1.0789
33 A A -1.2602
34 K A -2.5384
35 H A -1.8664
36 S A -1.3530
37 C A -0.5524
38 H A -0.9582
39 S A -0.7138
40 P A -0.7206
41 V A 0.0000
42 A A 0.0000
43 L A 0.0000
44 E A -1.9014
45 R A -2.6007
46 I A -1.9587
47 R A -3.1329
48 N A -2.7471
49 E A -2.3354
50 A A -1.6182
51 T A -1.5822
52 D A -2.0972
53 G A -1.2870
54 T A -1.6404
55 E A -2.7595
56 A A -2.2638
57 A A -2.4243
58 A A -3.1258
59 K A -4.2137
60 R A -4.2519
61 I A -3.2692
62 R A -4.2475
63 N A -4.1542
64 E A -4.0490
65 A A -3.0041
66 T A -2.2395
67 D A -2.7758
68 G A -1.9999
69 T A -1.5901
70 L A -1.4966
71 K A -2.1520
72 I A 0.0000
73 Q A -2.1834
74 V A 0.0000
75 S A -1.6491
76 L A -0.8255
77 Q A -1.2664
78 I A -0.4517
79 G A -1.5031
80 E A -2.4819
81 A A -1.4882
82 A A 0.0000
83 A A -2.0127
84 K A -2.6031
85 A A -2.4529
86 D A -3.3400
87 A A -2.8340
88 E A -3.2524
89 R A -2.8316
90 A A -1.3701
91 G A -1.4474
92 L A -0.5480
93 F A -0.1555
94 V A 0.0000
95 R A -1.8252
96 T A -1.9033
97 S A -1.4895
98 A A -1.7623
99 P A -1.6267
100 C A -1.1140
101 T A -0.3847
102 I A 0.3620
103 T A -0.4881
104 G A -1.4916
105 E A -2.3495
106 A A -1.3963
107 A A 0.0000
108 A A 0.0000
109 K A -2.1293
110 P A -2.4001
111 K A -2.7221
112 G A -2.3116
113 E A -2.5993
114 T A -1.8151
115 L A 0.0000
116 T A -0.9218
117 V A 0.0000
118 G A 0.0000
119 F A 0.0000
120 T A -1.3856
121 D A 0.0000
122 S A -2.4441
123 R A -2.6323
124 K A -2.2289
125 I A -0.5664
126 S A -0.4975
127 H A -0.2131
128 S A -0.3507
129 C A 0.0000
130 E A -1.2268
131 A A -1.0081
132 A A -1.2911
133 A A -1.2690
134 K A -1.7007
135 T A -0.8099
136 V A 0.3653
137 R A -0.9077
138 Y A 0.0214
139 K A -1.2142
140 C A -0.4106
141 N A -1.0199
142 C A -0.2425
143 G A -0.7753
144 G A -1.2422
145 S A -1.6136
146 N A -2.3526
147 E A -2.3385
148 G A -0.9983
149 L A 0.6019
150 T A 0.0578
151 T A -0.5093
152 T A -1.5977
153 D A -3.1988
154 K A -3.4368
155 E A -3.3937
156 A A -2.3279
157 A A -2.4281
158 A A -2.5259
159 K A -2.9053
160 H A -1.8994
161 P A -0.9364
162 T A -0.7080
163 L A -0.2253
164 L A 0.0000
165 S A 0.0000
166 Y A -1.2315
167 R A -1.9019
168 N A -2.1050
169 M A -1.3772
170 G A -2.2820
171 E A -3.0187
172 E A -3.2515
173 P A -2.2906
174 N A -2.0039
175 Y A -0.7120
176 Q A -1.7386
177 E A -2.3384
178 E A -1.7930
179 W A 0.1612
180 V A 0.0000
181 M A -0.0479
182 H A -1.1846
183 K A -1.6712
184 K A -1.9186
185 E A -2.2063
186 A A 0.0000
187 A A -0.6237
188 A A 0.0000
189 K A -1.5155
190 P A -0.3754
191 T A -0.6425
192 E A -1.5488
193 G A 0.0000
194 L A 0.0000
195 E A -0.8070
196 V A 0.0000
197 T A -1.4471
198 W A -0.8136
199 G A -1.1505
200 N A -2.2345
201 N A -2.6326
202 E A -2.8392
203 P A -1.7350
204 Y A -1.1365
205 K A -1.5146
206 Y A -0.1882
207 W A 0.5726
208 P A 0.7101
209 Q A 0.2800
210 L A 1.1680
211 S A -0.2877
212 T A -0.9107
213 N A -1.7536
214 G A -1.6936
215 T A -1.6255
216 E A -2.2382
217 A A -1.5785
218 A A -1.7702
219 A A -2.7013
220 K A -4.2104
221 A A -3.8101
222 E A -5.0748
223 E A -5.5987
224 E A -5.4100
225 R A -5.4639
226 E A -4.8474
227 A A -3.9466
228 E A -4.2848
229 L A -1.6621
230 T A -1.6789
231 R A -2.9168
232 E A -2.3080
233 A A -0.4358
234 L A 0.6918
235 P A -0.4452
236 P A -0.3473
237 L A 0.6975
238 Q A -1.3393
239 E A -2.2345
240 A A -1.1807
241 A A -0.8517
242 A A -1.2184
243 K A -2.0360
244 I A -0.7633
245 Q A -1.2894
246 M A -0.6825
247 R A -1.7180
248 T A -1.1325
249 Q A -1.1056
250 V A 0.7015
251 E A -0.3389
252 L A 1.0152
253 L A 0.5188
254 D A -1.6976
255 E A -2.0612
256 H A -2.3981
257 I A -1.4265
258 S A 0.0000
259 I A 0.0000
260 D A -1.0371
261 C A 0.0000
262 R A -2.7985
263 S A -2.5078
264 H A -2.5610
265 H A -2.7144
266 H A -2.7189
267 H A -2.6911
268 H A -2.4018
269 H A -1.9044
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018