Project name: VHL_R114Q

Status: done

Started: 2026-01-10 20:41:47
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Chain sequence(s) A: MEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVQSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:24)
Show buried residues

Minimal score value
-4.2108
Maximal score value
1.8652
Average score
-1.1054
Total score value
-176.8674

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.1335
2 E A -1.7389
3 A A -1.2553
4 G A -2.1059
5 R A -2.9697
6 P A -2.0290
7 R A -2.5977
8 P A -1.5231
9 V A -0.0579
10 L A -0.4834
11 R A -0.6732
12 S A 0.0000
13 V A 0.6819
14 N A -1.2877
15 S A -1.8815
16 R A -2.9241
17 E A -2.9314
18 P A -2.1273
19 S A 0.0000
20 Q A -1.8318
21 V A 0.0000
22 I A -0.7839
23 F A 0.0000
24 C A -1.1308
25 N A 0.0000
26 R A -2.1798
27 S A 0.0000
28 P A -0.9727
29 R A -0.9208
30 V A -0.0363
31 V A 0.0000
32 L A 0.1481
33 P A 0.0000
34 V A 0.0000
35 W A -0.3653
36 L A 0.0000
37 N A -1.1203
38 F A -0.7984
39 D A -2.3664
40 G A -1.7694
41 E A -2.7155
42 P A -1.5948
43 Q A -1.1059
44 P A -0.4934
45 Y A 0.1528
46 P A -0.1567
47 T A 0.0505
48 L A 0.0000
49 P A -0.6451
50 P A -1.0358
51 G A -1.3022
52 T A -1.0032
53 G A -1.5536
54 R A -1.9818
55 R A -2.4726
56 I A -1.6131
57 H A -1.6678
58 S A 0.0000
59 Y A -1.5753
60 R A -1.9001
61 G A -0.2540
62 H A 0.0000
63 L A 0.0000
64 W A 0.0000
65 L A 0.0000
66 F A 0.0000
67 R A 0.0000
68 D A 0.0000
69 A A -0.2128
70 G A -0.5029
71 T A -0.7586
72 H A -0.7506
73 D A -0.6677
74 G A -0.5772
75 L A 0.0000
76 L A -0.6414
77 V A 0.0000
78 N A -1.4370
79 Q A -1.7845
80 T A -1.4575
81 E A -1.6940
82 L A -0.3326
83 F A 0.0000
84 V A 1.5903
85 P A 0.0000
86 S A -0.0896
87 L A -0.3439
88 N A -0.7484
89 V A 0.4116
90 D A -1.5395
91 G A -1.5064
92 Q A -1.4944
93 P A -0.8452
94 I A 0.2780
95 F A 0.4392
96 A A 0.0000
97 N A -0.8653
98 I A 0.0000
99 T A -0.7127
100 L A 0.3237
101 P A 0.8041
102 V A 1.8652
103 Y A 0.5759
104 T A 0.1295
105 L A 0.4854
106 K A -1.2013
107 E A -1.4217
108 R A -1.2419
109 C A -0.2979
110 L A -0.6996
111 Q A -0.3519
112 V A 0.7091
113 V A 0.7915
114 Q A -0.3254
115 S A 0.5456
116 L A 1.4070
117 V A -0.1019
118 K A -2.0536
119 P A -2.3962
120 E A -3.3993
121 N A -2.9448
122 Y A 0.0000
123 R A -3.9638
124 R A -3.3465
125 L A -1.8092
126 D A -1.9829
127 I A -0.2314
128 V A 0.9030
129 R A -1.6730
130 S A -0.8606
131 L A -1.0725
132 Y A 0.0000
133 E A -3.4861
134 D A -2.8336
135 L A 0.0000
136 E A -3.4927
137 D A -3.5186
138 H A -2.7647
139 P A -1.9579
140 N A -2.2327
141 V A -1.8861
142 Q A -2.9158
143 K A -3.1926
144 D A -2.9003
145 L A 0.0000
146 E A -3.9546
147 R A -4.2108
148 L A -2.9473
149 T A -2.4994
150 Q A -3.3543
151 E A -3.9755
152 R A -3.4703
153 I A -1.8655
154 A A -2.3475
155 H A -3.1018
156 Q A -3.2246
157 R A -2.9564
158 M A -1.2422
159 G A -2.0463
160 D A -2.6452
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Laboratory of Theory of Biopolymers 2018