Project name: query_structure

Status: done

Started: 2026-03-16 21:40:32
Settings
Chain sequence(s) A: MLPAPKNLVVSRITEDSARLSWTAPDAAFDSFTIKYIERATWGEAIWLNVPGSERSYDLTGLKPGTEYVVLINGVKGGPESWPLIAHFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:48)
Show buried residues

Minimal score value
-2.9768
Maximal score value
2.1783
Average score
-0.7066
Total score value
-63.5936

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.9826
2 L A 0.2487
3 P A -0.1390
4 A A -0.2713
5 P A 0.0000
6 K A -2.0098
7 N A -1.1162
8 L A 0.2536
9 V A 1.1505
10 V A 0.1991
11 S A -0.5710
12 R A -1.9348
13 I A -0.8504
14 T A -1.6653
15 E A -2.9768
16 D A -2.6797
17 S A -2.0159
18 A A 0.0000
19 R A -1.1917
20 L A 0.0000
21 S A -0.3557
22 W A 0.0000
23 T A -1.2809
24 A A -1.4147
25 P A -1.4119
26 D A -2.2587
27 A A -1.4575
28 A A -1.2144
29 F A 0.0000
30 D A -2.6026
31 S A -1.9496
32 F A 0.0000
33 T A -0.5343
34 I A 0.0000
35 K A 0.5919
36 Y A 0.3128
37 I A 0.0000
38 E A -1.4415
39 R A -1.4559
40 A A -0.5857
41 T A -0.4029
42 W A 0.0650
43 G A -0.7871
44 E A -1.3877
45 A A -0.1567
46 I A 0.8228
47 W A 1.1154
48 L A 0.3633
49 N A -0.9985
50 V A 0.0000
51 P A -1.3774
52 G A 0.0000
53 S A -1.5705
54 E A -1.6349
55 R A -1.1284
56 S A -0.6521
57 Y A -0.7729
58 D A -1.7059
59 L A 0.0000
60 T A -1.3357
61 G A -1.4904
62 L A 0.0000
63 K A -2.9422
64 P A -2.5102
65 G A -1.7501
66 T A -1.9145
67 E A -1.8713
68 Y A 0.0000
69 V A 0.0000
70 V A 0.0000
71 L A 1.0817
72 I A 0.0000
73 N A -0.2718
74 G A 0.0000
75 V A -1.8497
76 K A -2.3371
77 G A -1.8113
78 G A -1.7243
79 P A -1.3886
80 E A -1.8543
81 S A 0.0000
82 W A 1.1503
83 P A 0.6339
84 L A 1.0588
85 I A 2.1783
86 A A 0.9025
87 H A -0.6326
88 F A 0.0000
89 T A -1.3172
90 T A -1.7432
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Laboratory of Theory of Biopolymers 2018