| Chain sequence(s) |
A: SKGHKGH
C: SKGHKGH B: SKGHKGH D: SKGHKGH input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:02)
[INFO] Main: Simulation completed successfully. (00:01:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | -1.8915 | |
| 2 | K | A | -3.1457 | |
| 3 | G | A | -3.1418 | |
| 4 | H | A | -3.6185 | |
| 5 | K | A | -3.8485 | |
| 6 | G | A | -2.7683 | |
| 7 | H | A | -2.3543 | |
| 1 | S | B | -2.1406 | |
| 2 | K | B | -3.2157 | |
| 3 | G | B | -3.3003 | |
| 4 | H | B | -3.7536 | |
| 5 | K | B | -4.1451 | |
| 6 | G | B | -3.2427 | |
| 7 | H | B | -2.8743 | |
| 1 | S | C | -2.0456 | |
| 2 | K | C | -3.4359 | |
| 3 | G | C | -3.1381 | |
| 4 | H | C | -3.5449 | |
| 5 | K | C | -4.3092 | |
| 6 | G | C | -3.3734 | |
| 7 | H | C | -2.8918 | |
| 1 | S | D | -1.6805 | |
| 2 | K | D | -3.1388 | |
| 3 | G | D | -2.6674 | |
| 4 | H | D | -3.0879 | |
| 5 | K | D | -3.7703 | |
| 6 | G | D | -2.7977 | |
| 7 | H | D | -2.3470 |