Project name: 3499bc7e6435347

Status: done

Started: 2026-05-21 11:42:09
Settings
Chain sequence(s) A: SKGHKGH
C: SKGHKGH
B: SKGHKGH
D: SKGHKGH
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:02)
Show buried residues

Minimal score value
-4.3092
Maximal score value
-1.6805
Average score
-3.0596
Total score value
-85.6694

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -1.8915
2 K A -3.1457
3 G A -3.1418
4 H A -3.6185
5 K A -3.8485
6 G A -2.7683
7 H A -2.3543
1 S B -2.1406
2 K B -3.2157
3 G B -3.3003
4 H B -3.7536
5 K B -4.1451
6 G B -3.2427
7 H B -2.8743
1 S C -2.0456
2 K C -3.4359
3 G C -3.1381
4 H C -3.5449
5 K C -4.3092
6 G C -3.3734
7 H C -2.8918
1 S D -1.6805
2 K D -3.1388
3 G D -2.6674
4 H D -3.0879
5 K D -3.7703
6 G D -2.7977
7 H D -2.3470
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Laboratory of Theory of Biopolymers 2018