Project name: query_structure

Status: done

Started: 2026-03-16 22:56:47
Settings
Chain sequence(s) A: AVNMNAINFDAAVNMNAIDNMN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:17)
Show buried residues

Minimal score value
-1.6778
Maximal score value
1.4821
Average score
-0.0377
Total score value
-0.8301

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.7486
2 V A 1.4821
3 N A -0.3220
4 M A 0.4732
5 N A -0.8234
6 A A -0.0978
7 I A 0.3852
8 N A -0.5608
9 F A 1.0914
10 D A -0.6186
11 A A -0.0918
12 A A 0.7316
13 V A 1.0418
14 N A -0.2663
15 M A 0.5918
16 N A -0.8313
17 A A -0.0546
18 I A 0.8402
19 D A -1.6006
20 N A -1.6778
21 M A -0.0297
22 N A -1.2413
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Laboratory of Theory of Biopolymers 2018