Project name: query_structure

Status: done

Started: 2026-03-16 21:21:38
Settings
Chain sequence(s) A: MIPGGLTEARPATAEVQEIADRVKAQLEEETNEKYEIFKAVEYKTQVVAGVNYFIKMDVGGGCFTHIKVFKDLSGKNNLELTGYQTNKTEDDELTYF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:40)
Show buried residues

Minimal score value
-4.1886
Maximal score value
2.2837
Average score
-0.9752
Total score value
-94.5977

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.8754
2 I A 2.2837
3 P A 1.2893
4 G A 0.9870
5 G A 0.8703
6 L A 0.4502
7 T A -0.4865
8 E A -2.1904
9 A A -2.0722
10 R A -2.3097
11 P A -1.3723
12 A A -1.1809
13 T A -1.2186
14 A A -1.3700
15 E A -2.5264
16 V A 0.0000
17 Q A -2.4261
18 E A -3.2814
19 I A 0.0000
20 A A 0.0000
21 D A -3.0582
22 R A -3.2474
23 V A 0.0000
24 K A -2.3342
25 A A -2.1719
26 Q A -2.5803
27 L A 0.0000
28 E A -3.4842
29 E A -4.0675
30 E A -3.5719
31 T A -3.0966
32 N A -3.7988
33 E A -4.1886
34 K A -3.5222
35 Y A 0.0000
36 E A -2.1041
37 I A -0.5738
38 F A 0.0000
39 K A -1.6775
40 A A -1.2029
41 V A -0.9415
42 E A -1.6531
43 Y A -1.1089
44 K A 0.0000
45 T A 0.1126
46 Q A 1.1283
47 V A 2.1390
48 V A 1.8419
49 A A 1.1545
50 G A 0.0000
51 V A 1.3066
52 N A 0.4051
53 Y A 0.1717
54 F A 0.0000
55 I A 0.0000
56 K A 0.0000
57 M A 0.0000
58 D A -0.9025
59 V A -0.7816
60 G A -0.5741
61 G A -0.5285
62 G A -1.1773
63 C A -0.9060
64 F A 0.0000
65 T A 0.0000
66 H A 0.0000
67 I A 0.0000
68 K A -0.1892
69 V A 0.0000
70 F A -0.3425
71 K A -0.9927
72 D A -0.8556
73 L A 0.5507
74 S A -0.8648
75 G A -1.6190
76 K A -2.7869
77 N A -2.8397
78 N A -2.8557
79 L A -2.1794
80 E A -2.4043
81 L A 0.0000
82 T A -0.4356
83 G A -0.1667
84 Y A -0.1153
85 Q A -0.6842
86 T A -0.9102
87 N A -1.6655
88 K A -2.2930
89 T A -2.5924
90 E A -3.4201
91 D A -3.5671
92 D A -3.2720
93 E A -2.9413
94 L A 0.0000
95 T A 0.0919
96 Y A 1.1557
97 F A 1.2697
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018