| Chain sequence(s) |
A: FFKGHGF
C: FFKGHGF B: FFKGHGF E: FFKGHGF D: FFKGHGF G: FFKGHGF F: FFKGHGF I: FFKGHGF H: FFKGHGF K: FFKGHGF J: FFKGHGF L: FFKGHGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:23)
[INFO] Main: Simulation completed successfully. (00:04:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.9142 | |
| 2 | F | A | 0.0000 | |
| 3 | K | A | -1.6079 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -1.0069 | |
| 6 | G | A | 0.0000 | |
| 7 | F | A | 3.0316 | |
| 1 | F | B | 2.9425 | |
| 2 | F | B | 1.1739 | |
| 3 | K | B | -1.6624 | |
| 4 | G | B | -1.9838 | |
| 5 | H | B | -1.2257 | |
| 6 | G | B | 0.6890 | |
| 7 | F | B | 2.8286 | |
| 1 | F | C | 2.6901 | |
| 2 | F | C | 0.0000 | |
| 3 | K | C | -2.1013 | |
| 4 | G | C | -2.1751 | |
| 5 | H | C | -0.9348 | |
| 6 | G | C | 0.0000 | |
| 7 | F | C | 3.5024 | |
| 1 | F | D | 2.4699 | |
| 2 | F | D | 0.0000 | |
| 3 | K | D | -1.7408 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -0.7159 | |
| 6 | G | D | 0.0000 | |
| 7 | F | D | 3.2119 | |
| 1 | F | E | 3.0574 | |
| 2 | F | E | 0.0000 | |
| 3 | K | E | -1.3809 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -0.5128 | |
| 6 | G | E | 0.0000 | |
| 7 | F | E | 2.9866 | |
| 1 | F | F | 2.6042 | |
| 2 | F | F | 0.0000 | |
| 3 | K | F | -1.1562 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -0.6810 | |
| 6 | G | F | 0.0000 | |
| 7 | F | F | 2.9703 | |
| 1 | F | G | 2.9620 | |
| 2 | F | G | 0.8888 | |
| 3 | K | G | -1.7156 | |
| 4 | G | G | -1.9592 | |
| 5 | H | G | -0.6008 | |
| 6 | G | G | 0.0000 | |
| 7 | F | G | 3.7621 | |
| 1 | F | H | 3.5017 | |
| 2 | F | H | 2.5709 | |
| 3 | K | H | -0.8926 | |
| 4 | G | H | -2.0665 | |
| 5 | H | H | -1.4995 | |
| 6 | G | H | 0.4296 | |
| 7 | F | H | 2.4723 | |
| 1 | F | I | 3.7751 | |
| 2 | F | I | 0.0000 | |
| 3 | K | I | -0.9814 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -0.9713 | |
| 6 | G | I | 0.0000 | |
| 7 | F | I | 2.8355 | |
| 1 | F | J | 2.9069 | |
| 2 | F | J | 0.0000 | |
| 3 | K | J | -1.6829 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -0.5778 | |
| 6 | G | J | 0.0000 | |
| 7 | F | J | 3.0470 | |
| 1 | F | K | 2.6920 | |
| 2 | F | K | 0.0000 | |
| 3 | K | K | -1.4674 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -0.3184 | |
| 6 | G | K | 0.0000 | |
| 7 | F | K | 2.9379 | |
| 1 | F | L | 3.2087 | |
| 2 | F | L | 0.0000 | |
| 3 | K | L | -1.2720 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -0.6325 | |
| 6 | G | L | 0.0000 | |
| 7 | F | L | 3.1452 |