| Chain sequence(s) |
A: HSQGTFTSDYSKYLDSRRAQDFVQWLMNT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | QE20A,ND28A,QR24A,MS27A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.141476 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:07)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:36)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:43)
[INFO] Main: Simulation completed successfully. (00:00:43)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | H | A | -1.3473 | |
| 2 | S | A | -1.3319 | |
| 3 | Q | A | -1.3803 | |
| 4 | G | A | -0.4572 | |
| 5 | T | A | -0.0328 | |
| 6 | F | A | 1.0575 | |
| 7 | T | A | 0.1270 | |
| 8 | S | A | -0.7206 | |
| 9 | D | A | -1.3898 | |
| 10 | Y | A | -0.0618 | |
| 11 | S | A | -1.2003 | |
| 12 | K | A | -2.5556 | |
| 13 | Y | A | -1.4773 | |
| 14 | L | A | -1.9493 | |
| 15 | D | A | -3.7368 | |
| 16 | S | A | -2.8561 | |
| 17 | R | A | -3.9147 | |
| 18 | R | A | -3.9171 | |
| 19 | A | A | -2.1884 | |
| 20 | E | A | -2.8924 | mutated: QE20A |
| 21 | D | A | -2.4759 | |
| 22 | F | A | 0.6228 | |
| 23 | V | A | 0.9668 | |
| 24 | R | A | -1.1290 | mutated: QR24A |
| 25 | W | A | 0.7192 | |
| 26 | L | A | 1.2129 | |
| 27 | S | A | -0.2164 | mutated: MS27A |
| 28 | D | A | -1.1318 | mutated: ND28A |
| 29 | T | A | -0.3335 |