Project name: query_structure

Status: done

Started: 2026-03-17 00:30:39
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Chain sequence(s) A: QVQLQESGGGLVQPGGSLRLSCVASGSFLDYYGIGWFRQAPGKEREGVAYRRDSDDSTYYADSVAGRFTIYRDSATNTVYLQMDNLRPEDTAVYSCAATLRVGNSWRDESLYDYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:32)
Show buried residues

Minimal score value
-3.8264
Maximal score value
1.0098
Average score
-0.8439
Total score value
-105.4851

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2541
2 V A -0.7286
3 Q A -1.3494
4 L A 0.0000
5 Q A -0.9403
6 E A 0.0000
7 S A -0.9443
8 G A -0.9941
9 G A -0.7622
10 G A -0.0418
11 L A 1.0098
12 V A -0.1080
13 Q A -1.5513
14 P A -2.0057
15 G A -2.0083
16 G A -1.3577
17 S A -1.5894
18 L A -1.0310
19 R A -2.0289
20 L A 0.0000
21 S A -0.4567
22 C A 0.0000
23 V A 0.3065
24 A A 0.0000
25 S A -0.6597
26 G A -0.5157
27 S A -0.1527
28 F A 0.0000
29 L A 0.1745
30 D A -1.3332
31 Y A 0.0000
32 Y A -0.9263
33 G A 0.0000
34 I A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A -0.4149
38 R A -1.4812
39 Q A -2.4332
40 A A -2.1656
41 P A -1.5051
42 G A -2.0633
43 K A -3.5213
44 E A -3.8264
45 R A -3.1891
46 E A -2.1111
47 G A -0.7136
48 V A 0.0000
49 A A 0.0000
50 Y A 0.1016
51 R A -1.2786
52 R A -2.3076
53 D A -2.9729
54 S A -2.7074
55 D A -3.3734
56 D A -3.3844
57 S A -1.9586
58 T A -0.5926
59 Y A 0.4267
60 Y A 0.1552
61 A A 0.0000
62 D A -1.7027
63 S A -1.2981
64 V A 0.0000
65 A A -0.7086
66 G A -1.0252
67 R A -1.2490
68 F A 0.0000
69 T A -0.2340
70 I A 0.0000
71 Y A 0.0886
72 R A -0.6651
73 D A -0.7630
74 S A -0.4341
75 A A -0.4248
76 T A -0.3111
77 N A -0.2139
78 T A 0.0000
79 V A 0.0000
80 Y A -0.1825
81 L A 0.0000
82 Q A -0.9202
83 M A 0.0000
84 D A -2.0730
85 N A -2.5137
86 L A 0.0000
87 R A -3.2053
88 P A -2.2207
89 E A -2.5412
90 D A 0.0000
91 T A -1.0500
92 A A 0.0000
93 V A -0.4886
94 Y A 0.0000
95 S A 0.0000
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 T A 0.0000
100 L A -0.2650
101 R A -1.4234
102 V A 0.3957
103 G A -0.5575
104 N A -1.2623
105 S A -0.5513
106 W A -0.1731
107 R A -1.0945
108 D A -2.4261
109 E A -2.4223
110 S A -1.4364
111 L A -0.3681
112 Y A -0.2683
113 D A -0.1903
114 Y A 0.0674
115 W A -0.1096
116 G A -0.6635
117 Q A -1.4030
118 G A -0.9858
119 T A -1.0030
120 Q A -0.9979
121 V A 0.0000
122 T A -0.3380
123 V A 0.0000
124 S A -0.8006
125 S A -0.5066
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Laboratory of Theory of Biopolymers 2018