| Chain sequence(s) |
A: QVQLQESGGGLVQPGGSLRLSCVASGSFLDYYGIGWFRQAPGKEREGVAYRRDSDDSTYYADSVAGRFTIYRDSATNTVYLQMDNLRPEDTAVYSCAATLRVGNSWRDESLYDYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:31)
[INFO] Main: Simulation completed successfully. (00:01:32)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2541 | |
| 2 | V | A | -0.7286 | |
| 3 | Q | A | -1.3494 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -0.9403 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.9443 | |
| 8 | G | A | -0.9941 | |
| 9 | G | A | -0.7622 | |
| 10 | G | A | -0.0418 | |
| 11 | L | A | 1.0098 | |
| 12 | V | A | -0.1080 | |
| 13 | Q | A | -1.5513 | |
| 14 | P | A | -2.0057 | |
| 15 | G | A | -2.0083 | |
| 16 | G | A | -1.3577 | |
| 17 | S | A | -1.5894 | |
| 18 | L | A | -1.0310 | |
| 19 | R | A | -2.0289 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4567 | |
| 22 | C | A | 0.0000 | |
| 23 | V | A | 0.3065 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6597 | |
| 26 | G | A | -0.5157 | |
| 27 | S | A | -0.1527 | |
| 28 | F | A | 0.0000 | |
| 29 | L | A | 0.1745 | |
| 30 | D | A | -1.3332 | |
| 31 | Y | A | 0.0000 | |
| 32 | Y | A | -0.9263 | |
| 33 | G | A | 0.0000 | |
| 34 | I | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -0.4149 | |
| 38 | R | A | -1.4812 | |
| 39 | Q | A | -2.4332 | |
| 40 | A | A | -2.1656 | |
| 41 | P | A | -1.5051 | |
| 42 | G | A | -2.0633 | |
| 43 | K | A | -3.5213 | |
| 44 | E | A | -3.8264 | |
| 45 | R | A | -3.1891 | |
| 46 | E | A | -2.1111 | |
| 47 | G | A | -0.7136 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | Y | A | 0.1016 | |
| 51 | R | A | -1.2786 | |
| 52 | R | A | -2.3076 | |
| 53 | D | A | -2.9729 | |
| 54 | S | A | -2.7074 | |
| 55 | D | A | -3.3734 | |
| 56 | D | A | -3.3844 | |
| 57 | S | A | -1.9586 | |
| 58 | T | A | -0.5926 | |
| 59 | Y | A | 0.4267 | |
| 60 | Y | A | 0.1552 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -1.7027 | |
| 63 | S | A | -1.2981 | |
| 64 | V | A | 0.0000 | |
| 65 | A | A | -0.7086 | |
| 66 | G | A | -1.0252 | |
| 67 | R | A | -1.2490 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.2340 | |
| 70 | I | A | 0.0000 | |
| 71 | Y | A | 0.0886 | |
| 72 | R | A | -0.6651 | |
| 73 | D | A | -0.7630 | |
| 74 | S | A | -0.4341 | |
| 75 | A | A | -0.4248 | |
| 76 | T | A | -0.3111 | |
| 77 | N | A | -0.2139 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.1825 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -0.9202 | |
| 83 | M | A | 0.0000 | |
| 84 | D | A | -2.0730 | |
| 85 | N | A | -2.5137 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -3.2053 | |
| 88 | P | A | -2.2207 | |
| 89 | E | A | -2.5412 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0500 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.4886 | |
| 94 | Y | A | 0.0000 | |
| 95 | S | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | T | A | 0.0000 | |
| 100 | L | A | -0.2650 | |
| 101 | R | A | -1.4234 | |
| 102 | V | A | 0.3957 | |
| 103 | G | A | -0.5575 | |
| 104 | N | A | -1.2623 | |
| 105 | S | A | -0.5513 | |
| 106 | W | A | -0.1731 | |
| 107 | R | A | -1.0945 | |
| 108 | D | A | -2.4261 | |
| 109 | E | A | -2.4223 | |
| 110 | S | A | -1.4364 | |
| 111 | L | A | -0.3681 | |
| 112 | Y | A | -0.2683 | |
| 113 | D | A | -0.1903 | |
| 114 | Y | A | 0.0674 | |
| 115 | W | A | -0.1096 | |
| 116 | G | A | -0.6635 | |
| 117 | Q | A | -1.4030 | |
| 118 | G | A | -0.9858 | |
| 119 | T | A | -1.0030 | |
| 120 | Q | A | -0.9979 | |
| 121 | V | A | 0.0000 | |
| 122 | T | A | -0.3380 | |
| 123 | V | A | 0.0000 | |
| 124 | S | A | -0.8006 | |
| 125 | S | A | -0.5066 |