Project name: 2AGJ

Status: done

Started: 2026-03-23 10:55:09
Settings
Chain sequence(s) H: PVTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSSGSASAPTLFPLVSCENSSPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKDVPLPVVI
L: EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:49)
Show buried residues

Minimal score value
-3.5939
Maximal score value
2.006
Average score
-0.7365
Total score value
-324.7841

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E L -1.5895
2 I L -0.5342
3 V L 0.7071
4 L L 0.0000
5 T L -0.7616
6 Q L 0.0000
7 S L -0.8736
8 P L -0.4434
9 G L -0.7640
10 T L -0.2956
11 L L -0.1168
12 S L -0.4165
13 L L -0.9712
14 S L -1.4770
15 P L -1.8506
16 G L -2.0974
17 E L -2.7238
18 R L -2.8994
19 A L 0.0000
20 T L -0.5468
21 L L 0.0000
22 S L -0.9699
23 C L 0.0000
24 R L -2.4433
25 A L -1.4017
26 S L -1.2686
27 E L -2.2903
28 T L -1.7532
29 V L 0.0000
30 S L -1.3632
31 N L -1.7721
32 D L -1.5946
33 K L -0.9142
34 V L 0.0000
35 A L 0.0000
36 W L 0.0000
37 Y L 0.0000
38 Q L 0.0000
39 Q L 0.0000
40 K L -1.3927
41 P L -1.2087
42 G L -1.1574
43 Q L -1.4455
44 A L 0.0000
45 P L 0.0000
46 R L -1.3734
47 L L 0.0000
48 L L 0.0000
49 I L 0.0000
50 Y L -0.2940
51 G L -0.6023
52 A L 0.0000
53 S L -0.7912
54 S L -0.6783
55 R L -1.4257
56 A L -0.9570
57 T L -0.5723
58 G L -0.8797
59 I L 0.0000
60 P L -1.3662
61 D L -2.2526
62 R L -1.6832
63 F L 0.0000
64 S L -0.9912
65 G L -0.6027
66 S L -0.8420
67 G L -1.1378
68 S L -1.5447
69 G L -1.6088
70 T L -2.0373
71 D L -2.4991
72 F L 0.0000
73 T L -0.8587
74 L L 0.0000
75 S L -0.6212
76 I L 0.0000
77 S L -2.1022
78 G L -1.9575
79 L L 0.0000
80 E L -2.4245
81 P L -1.6967
82 E L -2.3105
83 D L 0.0000
84 F L -0.6735
85 V L 0.0000
86 V L -0.2786
87 Y L 0.0000
88 Y L 0.0000
89 C L 0.0000
90 Q L 0.0000
91 Q L 0.0000
92 Y L 0.0000
93 A L -0.6871
94 S L -0.6440
95 S L 0.0000
96 P L -0.7689
97 R L 0.0000
98 T L -0.1364
99 F L 0.0575
100 G L 0.0000
101 Q L -1.6873
102 G L -1.0176
103 T L 0.0000
104 K L -0.5373
105 V L 0.0000
106 E L 0.0000
107 I L -0.5151
108 K L -1.4318
109 R L -1.0336
110 T L -0.1502
111 V L 0.3403
112 A L 0.0474
113 A L -0.1040
114 P L 0.0000
115 S L -0.2246
116 V L 0.0000
117 F L 0.0000
118 I L 0.0000
119 F L 0.0000
120 P L -0.4118
121 P L 0.0000
122 S L -1.3776
123 D L -2.7892
124 E L -2.5745
125 Q L 0.0000
126 L L -2.1872
127 K L -2.7028
128 S L -1.6901
129 G L -1.1927
130 T L -0.9628
131 A L 0.0000
132 S L 0.0000
133 V L 0.0000
134 V L 0.0000
135 C L 0.0000
136 L L 0.0000
137 L L 0.0000
138 N L 0.0000
139 N L -0.6565
140 F L 0.0000
141 Y L 0.0000
142 P L -1.3080
143 R L -2.0997
144 E L -2.7719
145 A L -2.1531
146 K L -2.4249
147 V L -1.3912
148 Q L -0.9569
149 W L 0.0000
150 K L -0.6639
151 V L 0.0000
152 D L -1.8486
153 N L -1.5076
154 A L -0.3160
155 L L 0.6195
156 Q L -0.2080
157 S L -0.5260
158 G L -0.8542
159 N L -0.7335
160 S L -1.1199
161 Q L -1.3313
162 E L -1.8459
163 S L 0.0000
164 V L -0.4834
165 T L -1.0428
166 E L -2.1051
167 Q L -1.6839
168 D L -1.8910
169 S L -1.7341
170 K L -2.1970
171 D L -1.6152
172 S L -1.5940
173 T L 0.0000
174 Y L 0.0000
175 S L 0.0000
176 L L 0.0000
177 S L 0.0000
178 S L 0.0000
179 T L 0.0000
180 L L 0.0000
181 T L -0.3374
182 L L -0.6114
183 S L -1.2463
184 K L -2.0084
185 A L -1.8288
186 D L -2.5380
187 Y L 0.0000
188 E L -3.3676
189 K L -3.5939
190 H L -3.0013
191 K L -3.3642
192 V L -1.7781
193 Y L 0.0000
194 A L -0.6389
195 C L 0.0000
196 E L -0.9555
197 V L 0.0000
198 T L -1.3407
199 H L 0.0000
200 Q L -1.6929
201 G L -0.4667
202 L L -0.2620
203 S L -0.4642
204 S L -0.4517
205 P L -0.6270
206 V L 0.0146
207 T L -0.4185
208 K L -0.7106
209 S L -0.7976
210 F L 0.0000
211 N L -2.1156
212 R L -3.0064
213 G L -2.3737
214 E L -2.3299
215 C L -0.7823
1 P H -0.1811
2 V H 0.0079
3 T H -0.5545
4 L H 0.0000
5 K H -2.1092
6 E H 0.0000
7 S H -0.7117
8 G H -0.2909
9 P H -0.1164
10 T H 0.0827
11 L H -0.1474
12 V H 0.0000
13 K H -2.4051
14 P H -1.8547
15 T H -1.7384
16 Q H -1.8992
17 T H -1.2209
18 L H 0.0000
19 T H -0.0778
20 L H 0.0000
21 T H -0.3524
22 C H 0.0000
23 T H -1.2411
24 F H 0.0000
25 S H -0.7184
26 G H -0.4708
27 F H -0.2102
28 S H -0.2648
29 L H 0.0000
30 T H -0.4443
31 T H -0.2584
32 T H -0.1151
33 G H 0.2317
34 E H 0.0000
35 G H 0.0000
36 V H 0.0000
37 G H 0.0000
38 W H 0.0000
39 I H 0.0000
40 R H 0.0000
41 Q H -0.8651
42 P H -0.6270
43 P H -1.0030
44 G H -1.4855
45 K H -2.3687
46 A H -1.5415
47 L H 0.0000
48 E H -1.0867
49 F H 0.0000
50 L H 0.0000
51 A H 0.0000
52 F H 0.0000
53 I H 0.0000
54 Y H -1.1968
55 W H -1.1233
56 N H -2.0608
57 D H -2.5946
58 A H -2.0419
59 K H -2.7678
60 R H -2.3137
61 Y H -1.2972
62 N H -1.0916
63 P H -1.1305
64 S H -0.6711
65 L H 0.0000
66 Q H -1.3240
67 S H -0.8504
68 R H -1.0784
69 L H 0.0000
70 T H -0.6169
71 I H 0.0000
72 T H -0.7253
73 K H -1.3309
74 D H -1.5051
75 A H -1.2251
76 S H -1.4941
77 K H -2.3998
78 K H -1.9119
79 Q H -1.5603
80 V H 0.0000
81 V H 0.1428
82 L H 0.0000
83 T H -0.0461
84 L H 0.0000
85 T H -1.2238
86 N H -2.1715
87 L H 0.0000
88 D H -1.4955
89 P H -0.2519
90 V H 1.2639
91 D H 0.0000
92 T H 0.3411
93 A H 0.0000
94 T H -0.1047
95 Y H 0.0000
96 Y H 0.0000
97 C H 0.0000
98 A H 0.0000
99 R H -0.0069
100 T H 0.0000
101 S H 0.1680
102 G H 0.3978
103 W H 1.0452
104 D H 0.4262
105 I H 0.4289
106 E H 0.0000
107 F H 0.0000
108 E H -0.3167
109 Y H -0.0917
110 W H -0.6052
111 G H 0.0000
112 Q H -1.7240
113 G H -1.0100
114 T H -0.3727
115 L H 0.2339
116 V H 0.0000
117 T H 0.0000
118 V H 0.0000
119 S H -0.9785
120 S H -1.3344
121 G H -0.9164
122 S H -0.6073
123 A H -0.5538
124 S H -0.6420
125 A H -1.2868
126 P H 0.0000
127 T H -0.8656
128 L H 0.0000
129 F H 0.0000
130 P H 0.0000
131 L H 0.0000
132 V H 0.4606
133 S H 0.0000
134 C H -0.3608
135 E H -0.9308
136 N H -1.5780
137 S H -1.1013
138 S H -0.9990
139 P H -0.8697
140 S H -0.7002
141 S H -0.5951
142 T H -0.7136
143 V H 0.0000
144 A H 0.0000
145 V H 0.0000
146 G H 0.0000
147 C H 0.0000
148 L H 0.0000
149 A H 0.0000
150 Q H 0.0000
151 D H -0.7514
152 F H 0.0000
153 L H 0.0000
154 P H -0.5167
155 D H -0.3630
156 S H -0.6126
157 I H -0.4329
158 T H -0.4203
159 F H -0.4058
160 S H -0.8920
161 W H 0.0000
162 K H -1.9320
163 Y H -2.1672
164 K H -2.8954
165 N H -2.7319
166 N H -2.7032
167 S H -2.1695
168 D H -2.4035
169 I H -0.8620
170 S H -0.5142
171 S H 0.0000
172 T H -0.3522
173 R H -0.5466
174 G H -0.4859
175 F H 0.0000
176 P H -0.5883
177 S H -0.0400
178 V H 0.2005
179 L H 0.9132
180 R H -0.3495
181 G H -0.6842
182 G H -0.6096
183 K H -0.6162
184 Y H -0.0200
185 A H 0.0000
186 A H 0.0000
187 T H 0.0000
188 S H 0.0000
189 Q H 0.0000
190 V H 0.0000
191 L H 0.1921
192 L H 0.0000
193 P H -1.1801
194 S H -1.0109
195 K H -2.4293
196 D H -2.5715
197 V H 0.0000
198 M H -0.0146
199 Q H -1.5325
200 G H -1.6718
201 T H -1.1690
202 D H -2.1222
203 E H -2.2746
204 H H -1.6246
205 V H 0.0000
206 V H -1.5717
207 C H 0.0000
208 K H -2.0930
209 V H 0.0000
210 Q H -2.3997
211 H H 0.0000
212 P H -1.4091
213 N H -1.8855
214 G H -2.1507
215 N H -3.0612
216 K H -3.1740
217 E H -3.4343
218 K H -2.2670
219 D H -2.1310
220 V H 0.0000
221 P H -0.6302
222 L H -0.0386
223 P H 0.9330
224 V H 1.7499
225 V H 1.6426
226 I H 2.0060
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Laboratory of Theory of Biopolymers 2018