Project name: RP19-TPA

Status: done

Started: 2026-04-16 08:41:25
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Chain sequence(s) A: MDAMKRGLCCVLLLCGAVFVSPSQEIHARRLARRGGVKRISALIYEETRGVLKVDVFLKDLEPPIVVRFVRLIPVTDHSNAVMLSENRSLFFLRDIVEFRCHPGSLFGSSRVQYVVNPAVKIVFLNIDPSDFPNWHTAYYFKQYFHFRDDLEVQTPSSYIETLPKAIKRRINALKQLQVYPYDVPDYA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:59)
Show buried residues

Minimal score value
-3.4049
Maximal score value
3.561
Average score
-0.1792
Total score value
-33.6927

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.2249
2 D A -1.5777
3 A A -0.9633
4 M A -0.4724
5 K A -2.1900
6 R A -2.2778
7 G A -0.5612
8 L A 1.3941
9 C A 2.0717
10 C A 2.8613
11 V A 3.2893
12 L A 3.2780
13 L A 3.4163
14 L A 2.8655
15 C A 1.9683
16 G A 1.3467
17 A A 2.0053
18 V A 3.4025
19 F A 3.2372
20 V A 1.3388
21 S A 0.0376
22 P A -0.6256
23 S A -1.0483
24 Q A -1.6134
25 E A -2.2701
26 I A -0.5857
27 H A -1.8262
28 A A -1.6078
29 R A -2.9865
30 R A -3.4000
31 L A -1.8771
32 A A -2.6011
33 R A -3.4049
34 R A -2.9542
35 G A -1.8141
36 G A -1.0062
37 V A -0.2664
38 K A -2.0578
39 R A -2.3574
40 I A -0.6519
41 S A -0.6741
42 A A 0.7830
43 L A 1.9348
44 I A 1.9997
45 Y A 0.9428
46 E A -1.5462
47 E A -2.6384
48 T A -2.0612
49 R A -2.4519
50 G A -1.4760
51 V A -0.8037
52 L A -0.4788
53 K A -0.8884
54 V A 0.2462
55 D A 0.5402
56 V A 1.3298
57 F A 1.0389
58 L A -0.5401
59 K A -2.3198
60 D A -3.0362
61 L A -1.4977
62 E A -2.2833
63 P A -1.3563
64 P A -0.5692
65 I A 1.1221
66 V A 1.3877
67 V A 1.5858
68 R A -0.5540
69 F A 0.3016
70 V A 0.7248
71 R A -0.2905
72 L A 1.4364
73 I A 1.1773
74 P A 0.4790
75 V A 0.5081
76 T A -0.1329
77 D A 0.0000
78 H A -0.3512
79 S A -0.7447
80 N A -0.7728
81 A A -0.4724
82 V A 0.5374
83 M A 0.0924
84 L A 0.2660
85 S A -0.7855
86 E A -2.4011
87 N A -2.1377
88 R A -1.4421
89 S A -0.2697
90 L A 1.7947
91 F A 1.7268
92 F A 2.6967
93 L A 1.7921
94 R A -0.1406
95 D A 0.9028
96 I A 1.3476
97 V A 0.0000
98 E A -0.3950
99 F A 0.0000
100 R A -1.3156
101 C A 0.0000
102 H A -1.2126
103 P A -0.8258
104 G A -0.4665
105 S A 0.1351
106 L A 1.4938
107 F A 0.7773
108 G A -0.2738
109 S A -1.0285
110 S A -1.2642
111 R A -2.2358
112 V A -1.3271
113 Q A -0.8859
114 Y A 0.5561
115 V A 1.2759
116 V A 0.9564
117 N A -0.1451
118 P A 0.0003
119 A A -0.0405
120 V A 0.4709
121 K A -0.0022
122 I A 2.0180
123 V A 3.1839
124 F A 3.5610
125 L A 2.5977
126 N A 0.2320
127 I A 0.0253
128 D A -1.8485
129 P A -1.1323
130 S A -1.2327
131 D A -1.6330
132 F A 0.3870
133 P A -0.3521
134 N A -0.8011
135 W A 0.4467
136 H A -0.3499
137 T A 0.8789
138 A A 1.2880
139 Y A 1.8231
140 Y A 2.0328
141 F A 2.4191
142 K A -0.0304
143 Q A 0.0596
144 Y A 1.9952
145 F A 2.1234
146 H A 0.0847
147 F A 0.6529
148 R A -2.2538
149 D A -3.1437
150 D A -2.6246
151 L A -0.7361
152 E A -1.6105
153 V A 0.4234
154 Q A -0.8614
155 T A -0.1636
156 P A -0.2540
157 S A -0.4958
158 S A -0.2141
159 Y A 0.7422
160 I A 0.0818
161 E A -1.5987
162 T A -0.6268
163 L A -0.2372
164 P A -1.1119
165 K A -2.4201
166 A A -1.3182
167 I A -0.6299
168 K A -2.1600
169 R A -3.2291
170 R A -2.8460
171 I A -1.4135
172 N A -2.3860
173 A A -1.7597
174 L A -0.9002
175 K A -2.1488
176 Q A -1.0789
177 L A 0.7748
178 Q A -0.0693
179 V A 1.8097
180 Y A 1.9918
181 P A 1.0331
182 Y A 1.4100
183 D A -0.4271
184 V A 0.9087
185 P A -0.0746
186 D A -0.9486
187 Y A 0.6792
188 A A 0.1997
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Laboratory of Theory of Biopolymers 2018