Chain sequence(s) |
A: MDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:01) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01) [INFO] runJob: Creating pdb object from: input.pdb (00:00:01) [INFO] FoldX: Starting FoldX energy minimalization (00:00:01) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:08) [INFO] Main: Simulation completed successfully. (00:01:10) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | M | A | 0.9279 | |
2 | D | A | 0.5749 | |
3 | V | A | 3.1001 | |
4 | F | A | 3.5872 | |
5 | I | A | 3.0278 | |
6 | P | A | 0.7767 | |
7 | K | A | -0.9883 | |
8 | P | A | -0.6218 | |
9 | F | A | 0.8878 | |
10 | R | A | -0.6110 | |
11 | A | A | 0.6373 | |
12 | F | A | 2.1561 | |
13 | A | A | 2.9680 | |
14 | F | A | 2.9622 | |
15 | V | A | 3.0111 | |
16 | T | A | 1.1225 | |
17 | F | A | 0.4321 | |
18 | A | A | -0.2672 | |
19 | D | A | -1.1578 | |
20 | D | A | -2.3893 | |
21 | Q | A | -1.8736 | |
22 | I | A | -0.1121 | |
23 | A | A | -0.7499 | |
24 | Q | A | -1.9502 | |
25 | S | A | -0.9477 | |
26 | L | A | -0.7986 | |
27 | C | A | -1.3046 | |
28 | G | A | -1.8422 | |
29 | E | A | -2.4099 | |
30 | D | A | -1.8690 | |
31 | L | A | 0.5863 | |
32 | I | A | 2.4155 | |
33 | I | A | 1.7881 | |
34 | K | A | -0.2541 | |
35 | G | A | 0.7104 | |
36 | I | A | 2.3120 | |
37 | S | A | 1.2965 | |
38 | V | A | 0.9093 | |
39 | H | A | -0.9401 | |
40 | I | A | -0.7536 | |
41 | S | A | -1.4781 | |
42 | N | A | -1.7699 | |
43 | A | A | -1.3851 | |
44 | E | A | -2.8453 | |
45 | P | A | -2.5270 | |
46 | K | A | -3.1494 | |
47 | H | A | -3.2292 | |
48 | N | A | -3.3212 | |
49 | S | A | -2.6200 | |
50 | N | A | -3.0566 | |
51 | R | A | -3.8468 | |
52 | Q | A | -3.0509 | |
53 | L | A | -1.5051 | |
54 | E | A | -3.4936 | |
55 | R | A | -3.3532 | |
56 | S | A | -1.8158 | |
57 | G | A | -1.8404 | |
58 | R | A | -2.1024 | |
59 | F | A | 0.1411 | |
60 | G | A | -0.7055 | |
61 | G | A | -1.3335 | |
62 | N | A | -1.6606 | |
63 | P | A | -1.3665 | |
64 | G | A | -0.7621 | |
65 | G | A | -0.2770 | |
66 | F | A | 0.9312 | |
67 | G | A | -0.7029 | |
68 | N | A | -1.8048 | |
69 | Q | A | -2.0660 | |
70 | G | A | -1.1477 | |
71 | G | A | -0.3834 | |
72 | F | A | 1.1068 | |
73 | G | A | -0.3548 | |
74 | N | A | -1.6535 | |
75 | S | A | -1.9221 | |
76 | R | A | -2.5544 | |
77 | G | A | -1.7804 | |
78 | G | A | -1.4007 | |
79 | G | A | -0.7341 | |
80 | A | A | -0.2293 | |
81 | G | A | -0.0562 | |
82 | L | A | 0.6146 | |
83 | G | A | -0.8705 | |
84 | N | A | -2.0602 | |
85 | N | A | -2.5538 | |
86 | Q | A | -2.5534 | |
87 | G | A | -1.6625 | |
88 | S | A | -1.1447 | |
89 | N | A | -1.2803 | |
90 | M | A | -0.0577 | |
91 | G | A | -0.5526 | |
92 | G | A | -0.7373 | |
93 | G | A | -0.2326 | |
94 | M | A | 0.5165 | |
95 | N | A | -0.1511 | |
96 | F | A | 1.7925 | |
97 | G | A | 0.6803 | |
98 | A | A | 1.1505 | |
99 | F | A | 2.1732 | |
100 | S | A | 0.7918 | |
101 | I | A | 0.9334 | |
102 | N | A | -0.4629 | |
103 | P | A | -0.1571 | |
104 | A | A | 0.2966 | |
105 | M | A | 0.7776 | |
106 | M | A | 0.6708 | |
107 | A | A | 0.1300 | |
108 | A | A | 0.3731 | |
109 | A | A | -0.0019 | |
110 | Q | A | -0.8964 | |
111 | A | A | -0.5236 | |
112 | A | A | -0.1755 | |
113 | L | A | -0.1156 | |
114 | Q | A | -0.8809 | |
115 | S | A | -0.1788 | |
116 | S | A | 0.5732 | |
117 | W | A | 1.2813 | |
118 | G | A | 0.7595 | |
119 | M | A | 1.7308 | |
120 | M | A | 2.0910 | |
121 | G | A | 1.0549 | |
122 | M | A | 1.3786 | |
123 | L | A | 0.9843 | |
124 | A | A | -0.0007 | |
125 | S | A | -0.9651 | |
126 | Q | A | -2.0297 | |
127 | Q | A | -2.4808 | |
128 | N | A | -2.8308 | |
129 | Q | A | -2.6929 | |
130 | S | A | -1.6134 | |
131 | G | A | -1.2785 | |
132 | P | A | -0.9332 | |
133 | S | A | -1.1383 | |
134 | G | A | -1.5752 | |
135 | N | A | -2.4721 | |
136 | N | A | -2.9139 | |
137 | Q | A | -3.0154 | |
138 | N | A | -2.8452 | |
139 | Q | A | -2.5935 | |
140 | G | A | -1.7333 | |
141 | N | A | -1.5002 | |
142 | M | A | -0.6438 | |
143 | Q | A | -2.2382 | |
144 | R | A | -3.1458 | |
145 | E | A | -3.3537 | |
146 | P | A | -2.5072 | |
147 | N | A | -2.1403 | |
148 | Q | A | -1.4816 | |
149 | A | A | -0.0363 | |
150 | F | A | 1.2256 | |
151 | G | A | -0.0532 | |
152 | S | A | -0.6338 | |
153 | G | A | -1.4445 | |
154 | N | A | -2.1318 | |
155 | N | A | -1.8116 | |
156 | S | A | -0.6773 | |
157 | Y | A | 0.4551 | |
158 | S | A | -0.1966 | |
159 | G | A | -0.6897 | |
160 | S | A | -1.0655 | |
161 | N | A | -1.7470 | |
162 | S | A | -1.1447 | |
163 | G | A | -0.6305 | |
164 | A | A | 0.1272 | |
165 | A | A | 0.9276 | |
166 | I | A | 2.0094 | |
167 | G | A | 0.9481 | |
168 | W | A | 1.1922 | |
169 | G | A | 0.1083 | |
170 | S | A | -0.4076 | |
171 | A | A | -0.5067 | |
172 | S | A | -0.9684 | |
173 | N | A | -1.5189 | |
174 | A | A | -0.9422 | |
175 | G | A | -1.0841 | |
176 | S | A | -0.8920 | |
177 | G | A | -0.6958 | |
178 | S | A | -0.3518 | |
179 | G | A | -0.0701 | |
180 | F | A | 0.8835 | |
181 | N | A | -0.7622 | |
182 | G | A | -0.4968 | |
183 | G | A | -0.1458 | |
184 | F | A | 1.2787 | |
185 | G | A | 0.3312 | |
186 | S | A | -0.0593 | |
187 | S | A | -0.1759 | |
188 | M | A | -0.2150 | |
189 | D | A | -1.9133 | |
190 | S | A | -1.7456 | |
191 | K | A | -2.3647 | |
192 | S | A | -1.4006 | |
193 | S | A | -0.7798 | |
194 | G | A | -0.2607 | |
195 | W | A | 0.8956 | |
196 | G | A | 0.4726 | |
197 | M | A | 1.0471 |