Project name: tested_vpx_zn_0 [mutate: ID18A]

Status: done

Started: 2024-12-06 19:24:05
Settings
Chain sequence(s) A: MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues ID18A
Energy difference between WT (input) and mutated protein (by FoldX) -1.07441 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:29)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:31)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:58)
Show buried residues

Minimal score value
-3.9635
Maximal score value
1.2051
Average score
-1.2653
Total score value
-141.7119

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4914
2 S A -0.7837
3 D A -2.5921
4 P A -2.5471
5 R A -3.6008
6 E A -3.3991
7 R A -2.5774
8 I A 0.0630
9 P A -0.2852
10 P A -0.3334
11 G A -0.7725
12 N A -1.5622
13 S A -1.4222
14 G A -1.7733
15 E A -2.4730
16 E A -2.4613
17 T A -2.3648
18 D A -2.6520 mutated: ID18A
19 G A -2.0237
20 E A -2.8651
21 A A -1.7388
22 F A -0.4949
23 E A -2.3491
24 W A -1.5844
25 L A 0.0000
26 N A -1.9946
27 R A -3.0699
28 T A -2.2228
29 V A 0.0000
30 E A -3.6870
31 E A -3.9635
32 I A -2.6233
33 N A -2.5490
34 R A -3.3554
35 E A -2.9922
36 A A 0.0000
37 V A -1.4142
38 N A -1.2666
39 H A -0.6721
40 L A -0.7272
41 P A -1.1393
42 R A -2.2443
43 E A -1.9994
44 L A -0.7080
45 I A 0.0000
46 F A -0.0165
47 Q A -1.4874
48 V A 0.0000
49 W A -0.7336
50 Q A -1.8853
51 R A -2.7555
52 S A 0.0000
53 W A -2.2293
54 E A -3.3728
55 Y A -2.0432
56 W A -1.7762
57 H A -2.3650
58 D A -3.6744
59 E A -3.4374
60 Q A -2.6589
61 G A -2.0218
62 M A -0.7060
63 S A -0.3147
64 P A -0.3006
65 S A 0.3421
66 Y A 0.4373
67 V A 0.0000
68 K A 0.0868
69 Y A 0.8434
70 R A 0.0655
71 Y A 0.0000
72 L A 0.0000
73 C A -0.1056
74 L A 0.0155
75 I A 0.0000
76 Q A -1.2368
77 K A -1.2880
78 A A -0.5023
79 L A 0.0000
80 F A 0.0654
81 M A -0.4879
82 H A -0.9040
83 C A -0.7210
84 K A -1.8624
85 K A -2.4538
86 G A -1.8877
87 C A -1.1130
88 R A -1.4573
89 C A -0.1043
90 L A 0.5898
91 G A -0.9661
92 E A -2.2071
93 G A -1.9085
94 H A -2.1188
95 G A -1.5956
96 A A -0.6788
97 G A -1.0895
98 G A -0.7602
99 W A -0.1633
100 R A -1.7455
101 P A -1.2016
102 G A -1.0620
103 P A -1.1628
104 P A -1.3692
105 P A -1.0004
106 P A -1.1564
107 P A -0.6015
108 P A -0.2021
109 P A -0.1576
110 G A 0.1073
111 L A 1.2051
112 A A 0.3101
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Laboratory of Theory of Biopolymers 2018