| Chain sequence(s) |
I: RLLGAPVPVDENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGDLQSCEFHDEPEMAKYTTCTFVVYSIPWLNQIKLLESKCQ
input PDB |
| Selected Chain(s) | I |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with I chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:41)
[INFO] Main: Simulation completed successfully. (00:01:42)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 6 | R | I | -0.7843 | |
| 7 | L | I | 1.5105 | |
| 8 | L | I | 2.1096 | |
| 9 | G | I | 1.6116 | |
| 10 | A | I | 1.1714 | |
| 11 | P | I | 0.9750 | |
| 12 | V | I | 1.3092 | |
| 13 | P | I | -0.5223 | |
| 14 | V | I | -1.4443 | |
| 15 | D | I | -3.3606 | |
| 16 | E | I | -3.9064 | |
| 17 | N | I | -3.5388 | |
| 18 | D | I | -3.4305 | |
| 19 | E | I | -3.6680 | |
| 20 | G | I | -2.4928 | |
| 21 | L | I | 0.0000 | |
| 22 | Q | I | -3.2920 | |
| 23 | R | I | -3.0616 | |
| 24 | A | I | 0.0000 | |
| 25 | L | I | 0.0000 | |
| 26 | Q | I | -1.8847 | |
| 27 | F | I | -0.8559 | |
| 28 | A | I | 0.0000 | |
| 29 | M | I | 0.0000 | |
| 30 | A | I | -0.9470 | |
| 31 | E | I | -1.3524 | |
| 32 | Y | I | -1.0028 | |
| 33 | N | I | 0.0000 | |
| 34 | R | I | -2.5830 | |
| 35 | A | I | -1.3469 | |
| 36 | S | I | -1.6677 | |
| 37 | N | I | -2.2284 | |
| 38 | D | I | -2.0698 | |
| 39 | K | I | -2.3628 | |
| 40 | Y | I | -0.8637 | |
| 41 | S | I | 0.0000 | |
| 42 | S | I | 0.0000 | |
| 43 | R | I | -0.6755 | |
| 44 | V | I | -0.2553 | |
| 45 | V | I | -0.0597 | |
| 46 | R | I | -1.4262 | |
| 47 | V | I | -0.4033 | |
| 48 | I | I | 0.4033 | |
| 49 | S | I | -0.5668 | |
| 50 | A | I | -0.8325 | |
| 51 | K | I | -1.2624 | |
| 52 | R | I | -0.1847 | |
| 53 | Q | I | 0.9995 | |
| 54 | L | I | 2.3021 | |
| 55 | V | I | 1.8438 | |
| 56 | S | I | 0.7342 | |
| 57 | G | I | 0.0000 | |
| 58 | I | I | 1.0766 | |
| 59 | K | I | 0.3835 | |
| 60 | Y | I | 0.0000 | |
| 61 | I | I | -0.3342 | |
| 62 | L | I | 0.0000 | |
| 63 | Q | I | -0.5827 | |
| 64 | V | I | 0.0000 | |
| 65 | E | I | -0.5417 | |
| 66 | I | I | 0.0000 | |
| 67 | G | I | 0.0000 | |
| 68 | R | I | -1.1940 | |
| 69 | T | I | 0.0000 | |
| 70 | T | I | -0.7807 | |
| 71 | C | I | -0.6073 | |
| 72 | P | I | -1.1136 | |
| 73 | K | I | -1.7648 | |
| 74 | S | I | -1.3783 | |
| 75 | S | I | -1.0757 | |
| 76 | G | I | -1.5878 | |
| 77 | D | I | -2.1843 | |
| 78 | L | I | -1.0163 | |
| 79 | Q | I | -1.2628 | |
| 80 | S | I | -1.1482 | |
| 81 | C | I | -1.1858 | |
| 82 | E | I | -2.0280 | |
| 83 | F | I | -1.3903 | |
| 84 | H | I | -2.1560 | |
| 85 | D | I | -3.1729 | |
| 86 | E | I | -3.4321 | |
| 87 | P | I | -2.6293 | |
| 88 | E | I | -3.0214 | |
| 89 | M | I | -1.7639 | |
| 90 | A | I | 0.0000 | |
| 91 | K | I | -2.2076 | |
| 92 | Y | I | -0.4800 | |
| 93 | T | I | -0.3917 | |
| 94 | T | I | -0.6280 | |
| 95 | C | I | 0.0000 | |
| 96 | T | I | -1.0460 | |
| 97 | F | I | 0.0000 | |
| 98 | V | I | 0.0000 | |
| 99 | V | I | 0.0000 | |
| 100 | Y | I | 0.5052 | |
| 101 | S | I | 0.4167 | |
| 102 | I | I | 0.6453 | |
| 103 | P | I | 0.5058 | |
| 104 | W | I | 1.2844 | |
| 105 | L | I | 1.1729 | |
| 106 | N | I | -0.3989 | |
| 107 | Q | I | -0.3324 | |
| 108 | I | I | 0.4566 | |
| 109 | K | I | -0.2131 | |
| 110 | L | I | 0.2434 | |
| 111 | L | I | 0.5355 | |
| 112 | E | I | -1.0958 | |
| 113 | S | I | -1.1749 | |
| 114 | K | I | -2.1933 | |
| 115 | C | I | -1.4245 | |
| 116 | Q | I | -1.4056 |