Project name: D0604

Status: done

Started: 2025-07-15 08:27:40
Settings
Chain sequence(s) H: QVQLQESGGGLVQPGGSLTLSCTASGFTFRYSDMRWYRQGPGKERAMVARVTSTGSTYYADSVKGRFTVSRDNAKNTVYLQMNSLKPEDTAVYYCRAQSINWERDYWGQGTTVTVSS
L: ETTVTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLAEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPTWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:04)
Show buried residues

Minimal score value
-2.0532
Maximal score value
1.7673
Average score
-0.2778
Total score value
-62.5102

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.1568
2 V H -0.2858
3 Q H -1.1569
4 L H 0.0000
5 Q H -1.0196
6 E H 0.0000
7 S H -0.2122
8 G H -0.4061
9 G H -0.3132
10 G H 0.0026
11 L H 1.5398
12 V H 0.2733
13 Q H -1.1942
14 P H -0.4430
15 G H -0.5317
16 G H -0.2306
17 S H -0.2042
18 L H 0.1920
19 T H -0.1308
20 L H 0.0000
21 S H 0.0055
22 C H 0.0000
23 T H -0.0412
24 A H 0.0000
25 S H -0.2919
26 G H -0.3952
27 F H 0.3232
28 T H 0.0077
29 F H 0.0000
30 R H -1.6034
31 Y H 0.9738
32 S H 0.2181
33 D H 0.0000
34 M H 0.0000
35 R H 0.0000
36 W H 0.0000
37 Y H 0.0000
38 R H -0.2525
39 Q H -0.1977
40 G H -0.1381
41 P H -0.3527
42 G H -0.8238
43 K H -1.9724
44 E H -1.3253
45 R H 0.0000
46 A H 0.0249
47 M H 0.0000
48 V H 0.0000
49 A H 0.0000
50 R H 0.0000
51 V H 0.0000
52 T H -0.0248
53 S H -0.1018
54 T H -0.1494
55 G H -0.3945
56 S H -0.2812
57 T H -0.0058
58 Y H 0.4297
59 Y H 0.2500
60 A H -0.2882
61 D H -1.9702
62 S H -0.5410
63 V H 0.0000
64 K H -1.6398
65 G H -0.9077
66 R H -1.1144
67 F H 0.0000
68 T H -0.0564
69 V H 0.0000
70 S H -0.2558
71 R H -0.6836
72 D H -0.7068
73 N H -1.0825
74 A H -0.4416
75 K H -1.8035
76 N H -0.9367
77 T H 0.0000
78 V H 0.0000
79 Y H 0.3800
80 L H 0.0000
81 Q H -0.8623
82 M H 0.0000
82A N H -0.5047
82B S H -0.2763
82C L H 0.0000
83 K H -1.2077
84 P H -0.7950
85 E H -1.8665
86 D H 0.0000
87 T H -0.0201
88 A H 0.0000
89 V H 0.4699
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 R H 0.0000
94 A H 0.0000
95 Q H -0.1721
96 S H 0.2907
97 I H 1.7673
98 N H -0.6843
99 W H 0.6219
100 E H -1.7025
100A R H -0.9102
101 D H -0.2600
102 Y H 0.2123
103 W H 0.4696
104 G H 0.0000
105 Q H -1.2133
106 G H -0.3044
107 T H -0.0417
108 T H -0.0089
109 V H 0.0000
110 T H 0.1478
111 V H 0.0000
112 S H -0.2497
113 S H -0.2296
1 E L -1.8212
2 T L -0.3544
3 T L -0.0722
4 V L 0.0000
5 T L -0.0943
6 Q L -0.1755
7 S L -0.2375
8 P L -0.1221
9 A L 0.0045
10 S L -0.3695
11 L L 0.3006
12 S L -0.3265
13 A L 0.0000
14 S L 0.2220
15 V L 1.6667
16 G L -0.4759
17 E L -1.8343
18 T L -0.4838
19 V L 0.0000
20 T L -0.1863
21 I L 0.0000
22 T L -0.0219
23 C L 0.0000
24 R L -1.6773
25 A L -0.3239
26 S L -0.5362
27 E L -2.0532
28 N L -1.6061
29 I L 0.0000
30 Y L 1.2971
31 S L 0.3006
32 Y L 0.5328
33 L L 0.0000
34 A L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L -0.2563
39 K L -0.9720
40 Q L -1.4185
41 G L -0.9971
42 K L -1.7907
43 S L -0.3458
44 P L 0.0000
45 Q L -0.4740
46 L L 0.0000
47 L L 0.0000
48 V L 0.0000
49 Y L 0.4788
50 N L -0.3776
51 A L 0.0000
52 K L -1.7052
53 T L -0.2547
54 L L 0.4544
55 A L 0.0000
56 E L -1.9055
57 G L -0.7599
58 V L 0.1114
59 P L -0.1417
60 S L -0.3943
61 R L -0.9744
62 F L 0.0000
63 S L -0.1116
64 G L 0.0000
65 S L -0.2075
66 G L -0.5280
67 S L -0.3105
68 G L -0.0898
69 T L -0.2659
70 Q L -1.3773
71 F L 0.0000
72 S L -0.0327
73 L L 0.0000
74 K L -1.1852
75 I L 0.0000
76 N L -0.9290
77 S L -0.3514
78 L L 0.0000
79 Q L -0.3904
80 P L -0.6478
81 E L -1.8663
82 D L 0.0000
83 F L 0.1873
84 G L -0.0671
85 S L -0.2749
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 H L 0.0000
91 H L 0.0277
92 Y L 0.9184
93 G L -0.1898
94 T L -0.1464
95 P L -0.0661
95A T L -0.0416
96 W L 0.0000
97 T L -0.0079
98 F L 0.0000
99 G L 0.0000
100 G L -0.4789
101 G L -0.1541
102 T L 0.0000
103 K L -1.7341
104 L L 0.0000
105 E L -1.3077
106 I L 1.3902
107 K L -1.3267
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Laboratory of Theory of Biopolymers 2018