| Chain sequence(s) |
A: GSKGHFF
C: GSKGHFF B: GSKGHFF D: GSKGHFF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:51)
[INFO] Main: Simulation completed successfully. (00:00:52)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.9134 | |
| 2 | S | A | -1.0656 | |
| 3 | K | A | -2.7135 | |
| 4 | G | A | -2.1125 | |
| 5 | H | A | -0.7775 | |
| 6 | F | A | 1.0994 | |
| 7 | F | A | 2.5025 | |
| 1 | G | B | -0.5322 | |
| 2 | S | B | -0.8549 | |
| 3 | K | B | -2.7561 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -1.0415 | |
| 6 | F | B | 0.5210 | |
| 7 | F | B | 2.3220 | |
| 1 | G | C | -0.4642 | |
| 2 | S | C | -0.8483 | |
| 3 | K | C | -2.6062 | |
| 4 | G | C | -2.4312 | |
| 5 | H | C | -1.1409 | |
| 6 | F | C | 0.5669 | |
| 7 | F | C | 2.2976 | |
| 1 | G | D | -0.5789 | |
| 2 | S | D | -0.9132 | |
| 3 | K | D | -2.6721 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -1.0613 | |
| 6 | F | D | 0.7840 | |
| 7 | F | D | 2.4095 |