Project name: 369dabbb9891d46

Status: done

Started: 2026-02-11 05:53:31
Settings
Chain sequence(s) A: GSKGHFF
C: GSKGHFF
B: GSKGHFF
D: GSKGHFF
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
Show buried residues

Minimal score value
-2.7561
Maximal score value
2.5025
Average score
-0.4636
Total score value
-12.9806

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.9134
2 S A -1.0656
3 K A -2.7135
4 G A -2.1125
5 H A -0.7775
6 F A 1.0994
7 F A 2.5025
1 G B -0.5322
2 S B -0.8549
3 K B -2.7561
4 G B 0.0000
5 H B -1.0415
6 F B 0.5210
7 F B 2.3220
1 G C -0.4642
2 S C -0.8483
3 K C -2.6062
4 G C -2.4312
5 H C -1.1409
6 F C 0.5669
7 F C 2.2976
1 G D -0.5789
2 S D -0.9132
3 K D -2.6721
4 G D 0.0000
5 H D -1.0613
6 F D 0.7840
7 F D 2.4095
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018