| Chain sequence(s) |
A: KKGHKGH
C: KKGHKGH B: KKGHKGH D: KKGHKGH input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:22)
[INFO] Main: Simulation completed successfully. (00:01:23)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -4.1568 | |
| 2 | K | A | -4.2195 | |
| 3 | G | A | -3.2600 | |
| 4 | H | A | -3.6938 | |
| 5 | K | A | -3.7040 | |
| 6 | G | A | -2.9484 | |
| 7 | H | A | -2.2716 | |
| 1 | K | B | -5.0992 | |
| 2 | K | B | -5.0768 | |
| 3 | G | B | -3.8792 | |
| 4 | H | B | -4.2327 | |
| 5 | K | B | -4.2108 | |
| 6 | G | B | -3.2328 | |
| 7 | H | B | -2.8114 | |
| 1 | K | C | -4.9521 | |
| 2 | K | C | -5.2164 | |
| 3 | G | C | -3.7845 | |
| 4 | H | C | -4.0861 | |
| 5 | K | C | -3.8168 | |
| 6 | G | C | -2.9462 | |
| 7 | H | C | -2.7216 | |
| 1 | K | D | -3.9069 | |
| 2 | K | D | -4.4629 | |
| 3 | G | D | -3.0530 | |
| 4 | H | D | -3.2831 | |
| 5 | K | D | -3.3525 | |
| 6 | G | D | -2.1892 | |
| 7 | H | D | -2.1128 |