| Chain sequence(s) |
A: GSKGHFF
C: GSKGHFF B: GSKGHFF E: GSKGHFF D: GSKGHFF G: GSKGHFF F: GSKGHFF I: GSKGHFF H: GSKGHFF K: GSKGHFF J: GSKGHFF L: GSKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:12)
[INFO] Main: Simulation completed successfully. (00:03:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.3827 | |
| 2 | S | A | 0.0618 | |
| 3 | K | A | 0.1771 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -0.5310 | |
| 6 | F | A | 0.0000 | |
| 7 | F | A | -0.6239 | |
| 1 | G | B | -0.9236 | |
| 2 | S | B | 0.0000 | |
| 3 | K | B | -1.9043 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -0.4083 | |
| 6 | F | B | 0.0000 | |
| 7 | F | B | 2.0841 | |
| 1 | G | C | -0.9947 | |
| 2 | S | C | -1.2116 | |
| 3 | K | C | -2.2439 | |
| 4 | G | C | -1.9335 | |
| 5 | H | C | -1.0374 | |
| 6 | F | C | 0.7955 | |
| 7 | F | C | 2.3105 | |
| 1 | G | D | -0.2260 | |
| 2 | S | D | -0.3662 | |
| 3 | K | D | -1.9587 | |
| 4 | G | D | -1.4556 | |
| 5 | H | D | -1.0702 | |
| 6 | F | D | -0.1534 | |
| 7 | F | D | 1.1768 | |
| 1 | G | E | -0.4259 | |
| 2 | S | E | -0.2761 | |
| 3 | K | E | -0.4612 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -0.8194 | |
| 6 | F | E | 0.0000 | |
| 7 | F | E | -0.5363 | |
| 1 | G | F | -0.4484 | |
| 2 | S | F | 0.0000 | |
| 3 | K | F | -0.9524 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -0.6110 | |
| 6 | F | F | 0.0000 | |
| 7 | F | F | 0.6149 | |
| 1 | G | G | -0.4583 | |
| 2 | S | G | 0.0000 | |
| 3 | K | G | -0.1861 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -0.4992 | |
| 6 | F | G | 0.0000 | |
| 7 | F | G | -0.4155 | |
| 1 | G | H | -0.3480 | |
| 2 | S | H | 0.0000 | |
| 3 | K | H | -1.2852 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -0.4300 | |
| 6 | F | H | 0.0000 | |
| 7 | F | H | 1.9875 | |
| 1 | G | I | -0.3743 | |
| 2 | S | I | -0.4679 | |
| 3 | K | I | -1.8171 | |
| 4 | G | I | -1.7765 | |
| 5 | H | I | -0.9462 | |
| 6 | F | I | 0.6332 | |
| 7 | F | I | 2.1410 | |
| 1 | G | J | -0.5430 | |
| 2 | S | J | -0.8294 | |
| 3 | K | J | -2.3174 | |
| 4 | G | J | -1.5969 | |
| 5 | H | J | -0.1427 | |
| 6 | F | J | 1.8292 | |
| 7 | F | J | 2.8119 | |
| 1 | G | K | -0.8910 | |
| 2 | S | K | 0.0000 | |
| 3 | K | K | -1.8897 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -0.0156 | |
| 6 | F | K | 0.0000 | |
| 7 | F | K | 2.3780 | |
| 1 | G | L | -0.8293 | |
| 2 | S | L | 0.0000 | |
| 3 | K | L | -1.5501 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -0.3199 | |
| 6 | F | L | 0.0000 | |
| 7 | F | L | 1.8812 |