Project name: 36f9e175f8af598

Status: done

Started: 2026-02-11 06:24:23
Settings
Chain sequence(s) A: GSKGHFF
C: GSKGHFF
B: GSKGHFF
E: GSKGHFF
D: GSKGHFF
G: GSKGHFF
F: GSKGHFF
I: GSKGHFF
H: GSKGHFF
K: GSKGHFF
J: GSKGHFF
L: GSKGHFF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:16)
Show buried residues

Minimal score value
-2.3174
Maximal score value
2.8119
Average score
-0.25
Total score value
-21.0023

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.3827
2 S A 0.0618
3 K A 0.1771
4 G A 0.0000
5 H A -0.5310
6 F A 0.0000
7 F A -0.6239
1 G B -0.9236
2 S B 0.0000
3 K B -1.9043
4 G B 0.0000
5 H B -0.4083
6 F B 0.0000
7 F B 2.0841
1 G C -0.9947
2 S C -1.2116
3 K C -2.2439
4 G C -1.9335
5 H C -1.0374
6 F C 0.7955
7 F C 2.3105
1 G D -0.2260
2 S D -0.3662
3 K D -1.9587
4 G D -1.4556
5 H D -1.0702
6 F D -0.1534
7 F D 1.1768
1 G E -0.4259
2 S E -0.2761
3 K E -0.4612
4 G E 0.0000
5 H E -0.8194
6 F E 0.0000
7 F E -0.5363
1 G F -0.4484
2 S F 0.0000
3 K F -0.9524
4 G F 0.0000
5 H F -0.6110
6 F F 0.0000
7 F F 0.6149
1 G G -0.4583
2 S G 0.0000
3 K G -0.1861
4 G G 0.0000
5 H G -0.4992
6 F G 0.0000
7 F G -0.4155
1 G H -0.3480
2 S H 0.0000
3 K H -1.2852
4 G H 0.0000
5 H H -0.4300
6 F H 0.0000
7 F H 1.9875
1 G I -0.3743
2 S I -0.4679
3 K I -1.8171
4 G I -1.7765
5 H I -0.9462
6 F I 0.6332
7 F I 2.1410
1 G J -0.5430
2 S J -0.8294
3 K J -2.3174
4 G J -1.5969
5 H J -0.1427
6 F J 1.8292
7 F J 2.8119
1 G K -0.8910
2 S K 0.0000
3 K K -1.8897
4 G K 0.0000
5 H K -0.0156
6 F K 0.0000
7 F K 2.3780
1 G L -0.8293
2 S L 0.0000
3 K L -1.5501
4 G L 0.0000
5 H L -0.3199
6 F L 0.0000
7 F L 1.8812
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018