Project name: REST_test

Status: done

Started: 2025-03-09 19:44:27
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:36)
Show buried residues

Minimal score value
-1.9743
Maximal score value
2.3274
Average score
0.0319
Total score value
1.3407

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.7838
2 A A -0.6412
3 E A -1.4532
4 F A 1.2594
5 R A -1.6672
6 H A -1.6540
7 D A -1.8982
8 S A -0.7025
9 G A -0.2613
10 Y A 0.9928
11 E A -0.3158
12 V A 1.4764
13 H A -0.6937
14 H A -1.2297
15 Q A -1.1120
16 K A -1.7178
17 L A 0.9365
18 V A 0.7295
19 F A 2.3274
20 F A 2.3160
21 A A 0.2459
22 E A -1.6466
23 D A -1.8364
24 V A 0.4105
25 G A -0.3597
26 S A -0.5365
27 N A -1.7914
28 K A -1.9743
29 G A -0.3917
30 A A 0.0893
31 I A 1.5111
32 I A 2.1390
33 G A 0.4385
34 L A 1.4916
35 M A 0.6864
36 V A 1.6574
37 G A -0.2066
38 G A -0.0903
39 V A 1.9298
40 V A 1.9670
41 I A 2.2671
42 A A 0.4330
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Laboratory of Theory of Biopolymers 2018