Project name: CM163-183 Mod5

Status: done

Started: 2026-02-20 14:11:09
Settings
Chain sequence(s) A: TRNVANQIDPYLRKFYLAGRP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:12)
Show buried residues

Minimal score value
-2.2952
Maximal score value
1.6161
Average score
0.1117
Total score value
2.346

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 T A -0.8797
2 R A -2.2952
3 N A -1.6365
4 V A 0.4451
5 A A -0.1938
6 N A -1.0167
7 Q A -0.2681
8 I A 1.5978
9 D A 0.1799
10 P A 0.1753
11 Y A 1.4270
12 L A 1.1636
13 R A -0.1575
14 K A 0.3682
15 F A 1.3374
16 Y A 1.5062
17 L A 1.6161
18 A A 0.5472
19 G A -0.3506
20 R A -0.9903
21 P A -0.2294
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Laboratory of Theory of Biopolymers 2018