Project name: query_structure

Status: done

Started: 2026-03-16 23:32:33
Settings
Chain sequence(s) A: GSPRTEYEACRVRCQVAEHGVERQRRCQQVCEKRLREREGRRE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-5.5829
Maximal score value
0.3355
Average score
-2.7178
Total score value
-116.8659

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.8329
2 S A -2.5680
3 P A -2.3339
4 R A -3.0898
5 T A -2.0737
6 E A -2.8285
7 Y A -2.7556
8 E A -2.1165
9 A A -1.6038
10 C A -1.5290
11 R A -1.7543
12 V A 0.1008
13 R A -1.3426
14 C A -1.4676
15 Q A -1.5333
16 V A 0.3355
17 A A -0.7402
18 E A -1.7906
19 H A -1.9092
20 G A -1.8043
21 V A -1.1741
22 E A -3.2113
23 R A -4.3526
24 Q A -3.4503
25 R A -3.5758
26 R A -3.6872
27 C A -2.8262
28 Q A -2.7913
29 Q A -2.6939
30 V A -0.8508
31 C A 0.0000
32 E A -3.2655
33 K A -3.8979
34 R A -4.4164
35 L A -4.4402
36 R A -5.2642
37 E A -5.5829
38 R A -5.3637
39 E A -4.5549
40 G A -4.6879
41 R A -4.6727
42 R A -4.2645
43 E A -3.2041
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Laboratory of Theory of Biopolymers 2018