Project name: April_A3D

Status: done

Started: 2025-02-17 04:49:56
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Chain sequence(s) A: QEQNQEQPIRCEKDERFFSDKIAKYIPIQYVLSRYPSYGLNYYQQKPVALINNQFLPYPYYAKPAAVRSPAQILQWQVLSNTVPAKSCQAQPTTMARHPHPHLSFMAIPPKKNQDKTEIPTINTIASGEPTSTPTTEAVESTVATLEDSPEVIESPPEINTVQVTSTAV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-4.313
Maximal score value
2.877
Average score
-0.2087
Total score value
-35.2654

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.3355
2 E A -3.4655
3 Q A -3.2815
4 N A -3.3436
5 Q A -3.4985
6 E A -3.1015
7 Q A -2.1749
8 P A -0.6357
9 I A 0.4699
10 R A -1.4512
11 C A -1.1833
12 E A -3.2445
13 K A -4.3130
14 D A -4.2202
15 E A -3.5548
16 R A -2.1489
17 F A 0.9499
18 F A 1.5173
19 S A 0.0737
20 D A -1.2896
21 K A -1.5255
22 I A 0.7318
23 A A 0.2033
24 K A -0.2632
25 Y A 1.9597
26 I A 2.4419
27 P A 1.6595
28 I A 2.7359
29 Q A 1.3717
30 Y A 2.6114
31 V A 2.6460
32 L A 2.0195
33 S A 0.7131
34 R A -0.6936
35 Y A 0.5423
36 P A 0.0241
37 S A 0.5707
38 Y A 1.2966
39 G A 0.6196
40 L A 1.4812
41 N A 0.1408
42 Y A 1.2426
43 Y A 0.5237
44 Q A -1.4712
45 Q A -1.8954
46 K A -2.0881
47 P A -0.5337
48 V A 1.6453
49 A A 1.8754
50 L A 2.2331
51 I A 1.9109
52 N A -0.4415
53 N A -0.6811
54 Q A -0.6314
55 F A 1.6355
56 L A 2.1140
57 P A 1.6439
58 Y A 2.3316
59 P A 1.4514
60 Y A 2.0108
61 Y A 1.5888
62 A A 0.0491
63 K A -1.2964
64 P A -0.6189
65 A A -0.2642
66 A A 0.0327
67 V A 0.8194
68 R A -1.1353
69 S A -0.8837
70 P A -0.6207
71 A A -0.2054
72 Q A -0.0426
73 I A 1.9543
74 L A 1.7735
75 Q A 0.3876
76 W A 1.4831
77 Q A 0.5084
78 V A 1.8907
79 L A 1.7240
80 S A 0.4379
81 N A -0.3178
82 T A 0.2725
83 V A 1.1055
84 P A -0.0591
85 A A -0.3774
86 K A -1.5835
87 S A -1.0446
88 C A -0.5868
89 Q A -1.4434
90 A A -1.0827
91 Q A -1.5720
92 P A -0.9024
93 T A -0.2865
94 T A -0.0903
95 M A 0.3292
96 A A -0.6716
97 R A -2.2183
98 H A -2.1531
99 P A -1.8833
100 H A -1.8237
101 P A -1.0575
102 H A -0.4848
103 L A 1.4184
104 S A 1.4464
105 F A 2.8770
106 M A 2.6329
107 A A 1.9177
108 I A 2.0922
109 P A 0.0701
110 P A -1.3102
111 K A -2.9943
112 K A -3.7418
113 N A -4.0060
114 Q A -3.9268
115 D A -4.0988
116 K A -3.4948
117 T A -1.9733
118 E A -1.7673
119 I A 0.9963
120 P A 0.5671
121 T A 0.6706
122 I A 1.7612
123 N A 0.0116
124 T A 0.7900
125 I A 1.9248
126 A A 0.8283
127 S A -0.4173
128 G A -1.4928
129 E A -2.2282
130 P A -1.2994
131 T A -0.7292
132 S A -0.3968
133 T A -0.3736
134 P A -0.4003
135 T A -0.6582
136 T A -1.0446
137 E A -1.6287
138 A A -0.4915
139 V A 0.4570
140 E A -1.2644
141 S A -0.3914
142 T A 0.3110
143 V A 1.8642
144 A A 1.3074
145 T A 0.6936
146 L A 0.4460
147 E A -2.0301
148 D A -2.5297
149 S A -1.8137
150 P A -1.2581
151 E A -0.8425
152 V A 1.3141
153 I A 1.4834
154 E A -0.7822
155 S A -0.9413
156 P A -1.1002
157 P A -0.9583
158 E A -1.3618
159 I A 0.4468
160 N A -0.4969
161 T A 0.3358
162 V A 1.2698
163 Q A 0.3251
164 V A 1.5521
165 T A 0.5729
166 S A 0.1422
167 T A 0.2369
168 A A 0.8487
169 V A 1.7856
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Laboratory of Theory of Biopolymers 2018