Project name: query_structure

Status: done

Started: 2026-03-16 20:11:15
Settings
Chain sequence(s) A: GCALMTPSAVDCKQDSDCLAGCVCLPGMVRCGS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:23)
Show buried residues

Minimal score value
-3.4569
Maximal score value
2.0886
Average score
-0.0356
Total score value
-1.1763

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.4373
2 C A 1.7553
3 A A 1.2784
4 L A 2.0886
5 M A 1.8310
6 T A 0.9771
7 P A 0.1625
8 S A 0.0728
9 A A 0.0103
10 V A -0.3052
11 D A -2.1370
12 C A -2.0928
13 K A -3.0401
14 Q A -3.4569
15 D A -3.2354
16 S A -2.1845
17 D A -2.3323
18 C A -1.2901
19 L A 0.7743
20 A A 0.5584
21 G A 0.2138
22 C A 0.7352
23 V A 1.6858
24 C A 1.6594
25 L A 1.1210
26 P A 0.4315
27 G A 0.4967
28 M A 1.0439
29 V A 1.2117
30 R A -0.4148
31 C A 0.0327
32 G A 0.5492
33 S A 0.1859
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Laboratory of Theory of Biopolymers 2018