Project name: comprehensive_iter2_improved

Status: done

Started: 2025-12-31 01:41:31
Settings
Chain sequence(s) A: GIVEQCCTSICSLDQLEDYCNDKEHELCGSHLVEALYLVCGDRGFFYTPKK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:48)
Show buried residues

Minimal score value
-3.9647
Maximal score value
2.5767
Average score
-1.0717
Total score value
-54.6566

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.0200
2 I A -0.9370
3 V A 0.0000
4 E A -1.8822
5 Q A -1.3166
6 C A 0.0000
7 C A -0.4094
8 T A -0.4201
9 S A 0.6228
10 I A 2.2444
11 C A 0.0000
12 S A -0.6148
13 L A -1.7457
14 D A -3.0938
15 Q A -2.3712
16 L A 0.0000
17 E A -3.1932
18 D A -3.7380
19 Y A -2.7367
20 C A -2.7884
21 N A -3.5416
22 D A -3.7792
23 K A -3.9647
24 E A -3.6998
25 H A -3.0590
26 E A -2.8804
27 L A -1.5631
28 C A -0.9082
29 G A -0.8407
30 S A -0.9082
31 H A -1.4650
32 L A 0.0000
33 V A 0.1932
34 E A -0.8352
35 A A 0.1082
36 L A 0.0000
37 Y A 1.0966
38 L A 1.7204
39 V A 0.6560
40 C A 0.0000
41 G A -0.8147
42 D A -2.4463
43 R A -2.3588
44 G A -0.6040
45 F A 1.0287
46 F A 2.5767
47 Y A 1.7103
48 T A 0.0004
49 P A -1.3025
50 K A -2.8017
51 K A -2.5741
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Laboratory of Theory of Biopolymers 2018