| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVHDINSYLSLEGFWVDHVYWGQGTQVTVSSLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:44)
[INFO] Main: Simulation completed successfully. (00:01:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2780 | |
| 2 | V | A | -0.4085 | |
| 3 | Q | A | -1.6074 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.6676 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.1129 | |
| 8 | G | A | -1.0320 | |
| 9 | G | A | -0.8232 | |
| 10 | G | A | -0.0669 | |
| 11 | L | A | 1.0889 | |
| 12 | V | A | 0.2869 | |
| 13 | Q | A | -0.8002 | |
| 14 | A | A | -1.0949 | |
| 15 | G | A | -1.0489 | |
| 16 | G | A | -0.8127 | |
| 17 | S | A | -1.1680 | |
| 18 | L | A | -1.0072 | |
| 19 | R | A | -2.1342 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8678 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -1.1933 | |
| 24 | A | A | -0.7228 | |
| 25 | S | A | -0.7237 | |
| 26 | G | A | -0.1361 | |
| 27 | Y | A | 0.4819 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -1.2165 | |
| 30 | D | A | -1.8559 | |
| 31 | A | A | 0.0000 | |
| 32 | Y | A | -0.5528 | |
| 33 | Y | A | 0.0699 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | 0.0371 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.8084 | |
| 40 | A | A | -1.8332 | |
| 41 | P | A | -1.2932 | |
| 42 | G | A | -1.7589 | |
| 43 | K | A | -2.8451 | |
| 44 | E | A | -3.1728 | |
| 45 | R | A | -2.3223 | |
| 46 | E | A | -1.1248 | |
| 47 | F | A | 0.1927 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.3868 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | H | A | -1.5442 | |
| 54 | G | A | -1.1088 | |
| 55 | T | A | -1.0578 | |
| 56 | N | A | -1.2690 | |
| 57 | T | A | -0.0833 | |
| 58 | Y | A | 0.7674 | |
| 59 | Y | A | -0.1086 | |
| 60 | A | A | -0.8867 | |
| 61 | D | A | -2.2357 | |
| 62 | S | A | -1.7510 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4544 | |
| 65 | G | A | -1.7770 | |
| 66 | R | A | -1.4816 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7160 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6470 | |
| 71 | R | A | -1.2197 | |
| 72 | D | A | -1.6839 | |
| 73 | N | A | -1.8467 | |
| 74 | A | A | -1.2684 | |
| 75 | K | A | -2.1220 | |
| 76 | N | A | -1.5961 | |
| 77 | T | A | 0.0000 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6694 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2377 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.3798 | |
| 84 | S | A | -1.1731 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.2355 | |
| 87 | P | A | -1.6153 | |
| 88 | E | A | -2.3075 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.8989 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.5912 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.3778 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | H | A | -0.5063 | |
| 99 | D | A | -1.0899 | |
| 100 | I | A | -0.7559 | |
| 101 | N | A | -0.5751 | |
| 102 | S | A | 0.7382 | |
| 103 | Y | A | 2.3426 | |
| 104 | L | A | 2.5949 | |
| 105 | S | A | 1.7920 | |
| 106 | L | A | 1.4503 | |
| 107 | E | A | -0.1946 | |
| 108 | G | A | 0.9112 | |
| 109 | F | A | 2.3389 | |
| 110 | W | A | 1.8456 | |
| 111 | V | A | 0.8789 | |
| 112 | D | A | -1.3561 | |
| 113 | H | A | -1.1222 | |
| 114 | V | A | 0.2194 | |
| 115 | Y | A | 0.1523 | |
| 116 | W | A | 0.1746 | |
| 117 | G | A | -0.7899 | |
| 118 | Q | A | -1.5671 | |
| 119 | G | A | -0.9894 | |
| 120 | T | A | 0.0000 | |
| 121 | Q | A | -1.1818 | |
| 122 | V | A | 0.0000 | |
| 123 | T | A | -0.2411 | |
| 124 | V | A | 0.0000 | |
| 125 | S | A | -0.4923 | |
| 126 | S | A | -0.7056 | |
| 127 | L | A | 0.2569 | |
| 128 | E | A | -1.2568 |